Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 2.8e-73 278.5 136 100.0
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 3.2e-45 185.3 129 73.6
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 9.9e-39 163.7 126 67.5
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 7.4e-34 147.5 132 58.3
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 1.6e-25 119.8 128 54.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 1.1e-24 117.1 125 52.0
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.4e-24 116.7 138 51.4
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 1.4e-24 116.7 128 54.7
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.8e-24 116.3 126 53.2
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 3.1e-24 115.5 128 54.7
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 3.1e-24 115.5 126 51.6
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.1e-24 115.2 125 55.2
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 5.3e-24 114.8 125 54.4
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 5.3e-24 114.8 125 54.4
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 5.3e-24 114.8 130 53.1
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 6.9e-24 114.4 124 58.1
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.2e-23 113.6 125 53.6
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.5e-23 113.2 128 53.1
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 1.5e-23 113.2 125 51.2
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.0e-23 112.8 125 52.8
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 2.6e-23 112.5 134 53.0
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 7.6e-23 110.9 124 54.0
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 7.6e-23 110.9 125 53.6
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.7e-22 109.8 127 53.5
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.7e-22 109.8 125 50.4
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 8.5e-22 107.5 124 49.2
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.4e-21 106.7 124 53.2
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 4.2e-21 105.1 124 49.2
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 5.5e-21 104.8 129 46.5
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 2.7e-20 102.4 130 48.5
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.6e-20 102.1 129 50.4
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 6.1e-20 101.3 126 49.2
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 7.9e-20 100.9 126 48.4
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 7.9e-20 100.9 128 46.1
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 1.0e-19 100.5 127 46.5
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.4e-19 100.1 129 50.4
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 1.4e-19 100.1 126 49.2
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.4e-19 100.1 127 52.0
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.4e-19 100.1 129 51.2
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.8e-19 99.8 125 48.8
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.8e-19 99.8 150 44.7
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 2.3e-19 99.4 121 47.9
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 3.0e-19 99.0 124 46.8
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 3.9e-19 98.6 127 50.4
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 3.9e-19 98.6 127 49.6
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 5.1e-19 98.2 129 48.8
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 6.7e-19 97.8 126 48.4
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 6.7e-19 97.8 126 48.4
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 6.7e-19 97.8 126 48.4
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.1e-18 97.1 128 48.4
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 1.1e-18 97.1 127 50.4
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 1.1e-18 97.1 127 50.4
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 1.1e-18 97.1 130 51.5
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 1.5e-18 96.7 130 46.2
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 1.5e-18 96.7 131 45.0
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.9e-18 96.3 126 48.4
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.9e-18 96.3 126 48.4
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 1.9e-18 96.3 127 47.2
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.9e-18 96.3 124 47.6
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 2.5e-18 95.9 131 48.1
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 2.5e-18 95.9 126 48.4
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 2.5e-18 95.9 126 47.6
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.5e-18 95.9 126 46.8
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 3.3e-18 95.5 127 48.8
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.3e-18 95.5 124 49.2
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 5.7e-18 94.7 125 45.6
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 5.7e-18 94.7 124 47.6
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 5.7e-18 94.7 130 45.4
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 7.4e-18 94.4 125 49.6
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 9.7e-18 94.0 132 46.2
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 9.7e-18 94.0 130 46.9
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.7e-17 93.2 129 48.8
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 1.7e-17 93.2 129 48.8
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 2.2e-17 92.8 129 46.5
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 2.8e-17 92.4 133 44.4
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 2.8e-17 92.4 93 54.8
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.8e-17 92.4 129 45.7
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 3.7e-17 92.0 124 46.0
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 4.8e-17 91.7 126 45.2
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 4.8e-17 91.7 127 46.5
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 6.3e-17 91.3 136 41.9
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 8.2e-17 90.9 128 48.4
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 8.2e-17 90.9 134 43.3
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.8e-16 89.7 54 81.5
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 3.1e-16 89.0 128 47.7
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 3.1e-16 89.0 125 47.2
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 5.3e-16 88.2 126 48.4
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 6.9e-16 87.8 124 46.0
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 1.2e-15 87.0 96 53.1
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.5e-15 86.7 65 67.7
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.6e-15 85.9 124 43.5
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 3.4e-15 85.5 127 48.0
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 4.5e-15 85.1 127 42.5
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 4.5e-15 85.1 131 45.0
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 1.0e-14 84.0 124 42.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 1.3e-14 83.6 114 48.2
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 1.7e-14 83.2 98 51.0
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 2.9e-14 82.4 124 41.1
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 6.5e-14 81.3 124 44.4
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.9e-13 79.7 134 39.6
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 1.9e-13 79.7 141 41.8
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 1.2e-12 77.0 54 72.2
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.1e-12 76.3 131 38.2
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 6.1e-12 74.7 137 36.5
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 6.1e-12 74.7 132 39.4
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 1.0e-11 73.9 129 39.5
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 2.3e-11 72.8 130 37.7
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 2.6e-10 69.3 130 37.7
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 3.3e-10 68.9 100 46.0
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 3.3e-10 68.9 129 38.0
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 4.4e-10 68.6 99 45.5
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 7.4e-10 67.8 109 43.1
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 1.7e-09 66.6 129 41.1
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.2e-09 66.2 119 40.3
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 6.3e-09 64.7 96 44.8
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 1.4e-08 63.5 52 61.5
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 2.9e-06 55.8 93 41.9
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 5.0e-06 55.1 92 39.1


User provided reference genes

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