Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 3.5e-237 824.7 464 100.0
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 5.2e-148 528.5 392 68.6
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 4.8e-125 452.2 384 60.2
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.1e-124 451.1 391 59.3
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 2.5e-118 429.9 473 50.1
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.5e-118 429.9 390 57.9
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.2e-115 421.0 396 56.8
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 1.5e-115 420.6 396 56.6
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.0e-115 420.2 392 56.6
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 3.8e-114 416.0 391 56.3
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.9e-113 413.7 391 56.8
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 9.3e-113 411.4 391 55.2
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 7.4e-110 401.7 398 54.8
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 9.7e-110 401.4 394 55.1
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 4.1e-108 396.0 391 52.4
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 4.2e-105 386.0 364 55.5
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.1e-104 383.6 403 50.6
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.4e-103 380.9 394 53.0
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.3e-103 380.2 391 52.2
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.4e-100 370.9 398 49.0
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 6.9e-100 368.6 396 49.5
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 9.1e-100 368.2 394 50.0
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.7e-98 364.0 391 50.9
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.2e-98 363.6 383 47.3
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 3.8e-98 362.8 400 49.0
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 6.5e-98 362.1 397 48.9
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 8.5e-98 361.7 411 50.9
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.4e-97 360.9 316 56.6
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.4e-97 360.9 398 48.2
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 5.5e-97 359.0 395 49.9
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.2e-96 357.8 396 50.3
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.4e-95 354.4 411 46.0
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 5.1e-95 352.4 392 49.5
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 6.7e-95 352.1 434 45.2
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 5.7e-94 349.0 393 47.1
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 7.4e-94 348.6 385 48.8
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.2e-93 347.1 377 48.3
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.2e-93 347.1 391 47.3
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.4e-92 344.4 393 47.6
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 2.4e-92 343.6 396 46.2
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.6e-91 340.9 405 45.2
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 2.6e-91 340.1 395 47.3
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 5.9e-91 339.0 394 47.2
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 7.7e-91 338.6 398 48.5
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.3e-90 337.8 408 47.5
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 2.9e-90 336.7 393 45.5
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 5.0e-90 335.9 390 48.2
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 6.5e-90 335.5 392 47.4
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 6.5e-90 335.5 383 47.8
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 3.2e-89 333.2 417 45.8
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.4e-87 327.8 396 46.0
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.4e-87 327.8 409 43.8
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.4e-87 327.8 403 46.7
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.8e-87 327.4 391 46.5
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 2.3e-87 327.0 365 47.1
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.5e-86 324.3 382 47.1
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 2.2e-85 320.5 393 46.3
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 8.2e-85 318.5 390 44.9
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 8.2e-85 318.5 383 47.3
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 1.1e-84 318.2 392 43.6
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.4e-84 317.8 396 44.9
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.1e-84 316.6 384 44.5
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 3.1e-84 316.6 396 46.0
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.0e-84 315.5 384 44.3
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 7.0e-84 315.5 391 46.8
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 9.1e-84 315.1 401 46.4
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 9.1e-84 315.1 384 44.8
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.1e-84 315.1 384 44.3
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.0e-83 313.9 391 45.5
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 2.0e-83 313.9 397 42.1
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.7e-83 313.5 465 41.1
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.7e-82 310.8 351 46.7
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.2e-82 310.5 396 43.2
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.9e-82 310.1 397 41.6
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 5.0e-82 309.3 397 41.8
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 8.5e-82 308.5 397 42.8
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.1e-81 308.1 421 41.3
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.5e-81 305.8 384 44.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 8.0e-80 302.0 397 41.1
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-79 301.2 420 41.4
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.4e-78 296.2 387 43.7
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 2.2e-77 293.9 389 40.9
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.8e-77 293.5 390 42.1
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 3.7e-77 293.1 389 43.7
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 6.3e-77 292.4 389 41.4
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.4e-76 291.2 390 42.3
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 4.1e-76 289.7 411 41.1
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 9.1e-76 288.5 391 41.2
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.6e-75 287.7 397 43.6
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 2.9e-74 283.5 399 40.4
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 8.5e-74 282.0 413 40.7
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.5e-73 281.2 390 41.8
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 1.5e-73 281.2 390 43.1
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.5e-73 281.2 392 43.4
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 1.5e-73 281.2 390 43.1
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 1.5e-73 281.2 390 43.1
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.9e-73 280.8 392 43.4
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.9e-73 280.8 400 41.5
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 3.2e-73 280.0 394 40.4
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.2e-73 279.6 395 42.8
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 4.2e-73 279.6 392 41.6
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.7e-72 276.9 384 40.6
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 2.7e-72 276.9 387 41.6
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 1.2e-70 271.6 401 42.9
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.2e-70 271.6 386 40.2
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 3.4e-70 270.0 393 41.7
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 4.4e-70 269.6 396 41.4
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 7.5e-70 268.9 389 39.3
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.0e-66 258.5 604 29.5
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 3.2e-60 236.9 394 38.6
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.0e-59 234.2 431 37.4
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 5.9e-59 232.6 304 41.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.8e-56 223.8 245 44.9
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 3.6e-56 223.4 400 38.5
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.7e-56 223.0 390 36.9
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 4.6e-51 206.5 460 34.3
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 6.0e-51 206.1 302 41.4
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 4.0e-47 193.4 210 43.3
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.9e-44 184.5 309 36.9
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.9e-44 184.5 288 38.9
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 5.4e-44 183.0 437 32.7
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 4.6e-43 179.9 440 32.5
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 7.8e-43 179.1 347 34.3
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 2.3e-42 177.6 400 35.0
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 1.1e-41 175.3 109 76.1
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.4e-38 163.7 292 35.6
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 4.4e-38 163.3 237 39.7
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.8e-38 162.9 237 43.9
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.9e-37 160.6 218 42.2
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.8e-30 136.3 138 48.6
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-29 134.8 269 35.7
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 9.3e-28 129.0 291 33.0
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.3e-24 118.6 339 28.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.6e-24 118.2 435 25.3
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 1.4e-23 115.2 108 51.9
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 5.3e-23 113.2 116 50.0
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 9.0e-23 112.5 310 30.0
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.4e-22 110.5 119 48.7
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.5e-22 110.2 393 28.2
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.6e-22 109.4 118 49.2
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 9.9e-22 109.0 392 28.6
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.9e-22 109.0 246 32.5
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.3e-21 108.6 131 47.3
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.0e-18 99.0 184 37.5
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.9e-17 94.7 148 43.2
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 9.0e-15 85.9 140 42.9
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 3.4e-14 84.0 131 39.7
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 7.6e-14 82.8 176 33.5
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.8e-13 80.5 99 36.4
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.4e-12 77.8 121 35.5
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.5e-09 67.8 136 33.8


User provided reference genes

Program Settings