Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 9.5e-137 490.7 287 100.0
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.5e-62 244.2 337 51.0
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 1.7e-61 240.7 307 56.0
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 1.6e-51 207.6 293 46.4
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.4e-47 194.5 322 44.4
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 7.7e-46 188.7 310 47.4
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.0e-45 188.3 314 46.5
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.3e-45 188.0 316 46.2
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 8.5e-45 185.3 301 50.2
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.7e-43 179.5 336 43.5
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.7e-43 179.5 336 44.6
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 2.8e-40 170.2 321 44.2
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 3.1e-39 166.8 332 41.9
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 9.1e-39 165.2 301 43.2
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.7e-35 153.7 319 34.2
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 8.0e-35 152.1 334 42.8
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.5e-33 147.9 326 39.6
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.4e-31 141.4 312 40.4
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.4e-31 139.4 314 40.8
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 9.1e-31 138.7 305 41.3
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 2.0e-30 137.5 208 51.4
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 2.7e-30 137.1 310 40.0
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 3.5e-30 136.7 320 40.3
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 4.5e-30 136.3 323 40.6
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 7.7e-30 135.6 344 38.1
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.0e-29 135.2 325 38.5
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.0e-29 135.2 208 50.5
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 2.3e-29 134.0 316 39.6
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 2.3e-29 134.0 330 39.7
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.9e-29 133.7 205 51.7
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 2.9e-29 133.7 318 41.8
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 3.8e-29 133.3 318 38.4
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 5.0e-29 132.9 325 39.4
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 6.6e-29 132.5 330 38.5
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 8.6e-29 132.1 327 31.2
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 1.1e-28 131.7 305 40.7
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 2.5e-28 130.6 205 52.7
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.0e-26 125.2 304 38.8
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 1.4e-26 124.8 316 39.6
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 5.2e-26 122.9 319 36.1
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 6.8e-26 122.5 304 40.8
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.4e-25 119.8 321 35.2
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 9.8e-25 118.6 319 38.9
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 1.7e-24 117.9 208 46.6
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.7e-24 117.9 328 36.9
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.9e-24 116.3 300 38.3
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 6.3e-24 115.9 310 35.5
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.1e-23 115.2 317 29.3
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 2.4e-23 114.0 321 38.6
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 4.1e-23 113.2 206 44.7
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 5.4e-23 112.8 206 42.2
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 7.0e-23 112.5 197 48.7
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 7.0e-23 112.5 304 37.5
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 9.2e-23 112.1 189 36.0
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 9.2e-23 112.1 314 28.7
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 9.2e-23 112.1 314 35.4
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 1.2e-22 111.7 211 48.8
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 1.6e-22 111.3 323 38.4
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 2.0e-22 110.9 197 47.7
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 3.5e-22 110.2 317 38.5
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 5.9e-22 109.4 157 35.7
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 7.8e-22 109.0 317 37.5
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.0e-21 108.6 199 45.2
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 1.0e-21 108.6 155 40.6
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 1.3e-21 108.2 210 43.3
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 6.6e-21 105.9 199 46.7
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.9e-20 104.4 78 57.7
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 1.6e-19 101.3 164 38.4
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 6.1e-19 99.4 88 48.9
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.4e-18 98.2 329 37.1
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.8e-18 97.8 68 63.2
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.3e-18 97.4 206 45.6
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 8.9e-18 95.5 200 44.0
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.0e-17 94.4 308 38.0
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 2.0e-17 94.4 199 42.2
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.4e-17 93.2 311 26.7
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 4.4e-17 93.2 193 43.5
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 5.8e-17 92.8 328 36.3
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.7e-16 91.3 175 32.0
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 2.2e-16 90.9 200 45.5
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 3.7e-16 90.1 300 25.0
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 4.9e-16 89.7 199 42.7
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 6.4e-16 89.4 89 49.4
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 2.4e-15 87.4 191 28.8
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 3.2e-15 87.0 178 30.9
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 4.1e-15 86.7 67 56.7
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 7.0e-15 85.9 70 55.7
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 1.2e-14 85.1 324 33.3
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 2.7e-14 84.0 192 31.2
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 3.5e-14 83.6 325 31.7
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 7.8e-14 82.4 76 51.3
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.3e-13 81.6 195 27.7
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 1.3e-13 81.6 208 26.9
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.3e-13 81.6 72 48.6
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 2.3e-13 80.9 306 23.9
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 3.0e-13 80.5 187 27.3
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 6.6e-13 79.3 55 69.1
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.9e-12 77.8 174 48.3
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 5.6e-12 76.3 182 30.2
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 5.6e-12 76.3 68 51.5
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 9.5e-12 75.5 76 48.7
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 9.5e-12 75.5 83 42.2
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 1.2e-11 75.1 67 49.3
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 1.6e-11 74.7 92 38.0
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.6e-11 74.7 94 37.2
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 4.7e-11 73.2 312 26.6
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 4.7e-11 73.2 303 33.7
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 6.2e-11 72.8 321 27.4
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 1.1e-10 72.0 75 46.7
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 3.1e-10 70.5 189 32.3
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 1.2e-09 68.6 71 46.5
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 1.2e-09 68.6 71 46.5
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 1.5e-09 68.2 72 45.8
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 1.5e-09 68.2 64 46.9
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.0e-09 67.8 74 44.6
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 3.4e-09 67.0 71 46.5
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 3.4e-09 67.0 86 43.0
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 4.4e-09 66.6 68 47.1
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 5.8e-09 66.2 68 47.1
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 1.3e-08 65.1 68 45.6
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 1.3e-08 65.1 40 65.0
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.7e-08 64.7 42 64.3
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 3.7e-08 63.5 85 40.0
Sp7g30100 Schrenkiella parvula HOM05D001903 ORTHO05D001847 3.7e-08 63.5 68 44.1
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.7e-08 63.5 47 61.7
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 4.9e-08 63.2 99 39.4
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 4.9e-08 63.2 45 66.7
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 4.9e-08 63.2 43 58.1
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 6.4e-08 62.8 72 40.3
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.4e-07 61.6 73 43.8
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.4e-07 61.6 62 50.0
Eucgr.C02775 Eucalyptus grandis HOM05D001903 ORTHO05D001847 1.9e-07 61.2 87 40.2
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 2.4e-07 60.8 48 62.5
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.2e-07 60.5 43 65.1
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 3.2e-07 60.5 70 40.0
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 4.1e-07 60.1 53 54.7
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 4.1e-07 60.1 53 54.7
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 7.0e-07 59.3 70 38.6
BcaB05g25297 Brassica carinata HOM05D001903 ORTHO05D001847 9.2e-07 58.9 69 43.5
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 9.2e-07 58.9 72 41.7
Gohir.D06G119399 Gossypium hirsutum HOM05D001903 ORTHO05D001847 9.2e-07 58.9 73 42.5
Sc08g0006520 Simmondsia chinensis HOM05D001903 ORTHO05D001847 9.2e-07 58.9 53 52.8
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 1.6e-06 58.2 73 42.5
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 2.1e-06 57.8 79 40.5
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 2.7e-06 57.4 69 40.6
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 3.5e-06 57.0 80 38.8
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 3.5e-06 57.0 81 39.5
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 4.6e-06 56.6 88 31.8
arahy.Tifrunner.gnm1.ann1.6P54CG Arachis hypogaea HOM05D001903 ORTHO05D001847 4.6e-06 56.6 54 50.0
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 6.0e-06 56.2 136 30.9
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 6.0e-06 56.2 87 40.2
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 6.0e-06 56.2 133 33.8
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 7.8e-06 55.8 48 54.2
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 7.8e-06 55.8 77 39.0


User provided reference genes

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