Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 1.4e-282 975.7 507 100.0
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 2.7e-97 360.1 634 41.8
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 3.7e-78 296.6 597 38.9
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 1.4e-61 241.5 609 34.2
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 5.3e-61 239.6 519 38.0
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 3.4e-60 236.9 590 34.6
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 1.4e-56 224.9 616 32.5
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 4.4e-55 219.9 535 35.0
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 5.7e-55 219.5 541 34.9
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 7.4e-55 219.2 685 31.7
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.3e-51 208.4 713 29.6
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 5.0e-51 206.5 607 31.8
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 1.5e-50 204.9 698 30.8
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 2.5e-50 204.1 661 32.1
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 4.2e-50 203.4 712 29.1
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 5.5e-50 203.0 589 31.6
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 4.0e-48 196.8 590 31.7
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 6.7e-48 196.1 554 31.9
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 1.1e-47 195.3 582 31.1
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 2.6e-47 194.1 528 32.6
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 5.7e-47 193.0 589 30.6
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 2.8e-46 190.7 564 31.4
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 6.3e-46 189.5 574 31.5
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.4e-45 188.3 584 32.0
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 4.1e-45 186.8 518 31.9
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 7.0e-45 186.0 580 31.0
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 9.1e-45 185.7 643 29.9
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 9.1e-45 185.7 487 33.5
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 4.5e-44 183.3 607 30.1
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 7.7e-44 182.6 616 30.8
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 6.5e-43 179.5 646 28.8
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 1.5e-42 178.3 575 30.3
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 1.5e-42 178.3 589 30.6
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 2.1e-41 174.5 547 30.3
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 4.7e-41 173.3 486 31.7
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 8.0e-41 172.6 563 29.7
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 1.0e-40 172.2 538 30.7
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 1.4e-40 171.8 580 30.5
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 1.2e-39 168.7 606 29.2
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 1.5e-39 168.3 543 31.9
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 3.4e-39 167.2 591 30.8
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 3.4e-39 167.2 591 30.8
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 4.4e-39 166.8 527 30.7
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 4.4e-39 166.8 527 30.7
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 4.4e-39 166.8 527 30.7
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 4.4e-39 166.8 525 31.0
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 7.5e-39 166.0 534 31.3
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 1.3e-38 165.2 563 31.8
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 2.2e-38 164.5 591 30.3
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 2.2e-38 164.5 595 30.9
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 6.3e-38 162.9 619 28.8
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 8.3e-38 162.5 525 29.7
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 1.4e-37 161.8 653 27.0
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 2.4e-37 161.0 547 29.4
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 5.4e-37 159.8 545 28.4
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 3.8e-35 153.7 528 29.0
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 5.0e-35 153.3 582 29.6
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 5.0e-35 153.3 537 30.9
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 3.2e-34 150.6 610 26.9
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 4.2e-34 150.2 570 28.6
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 4.2e-34 150.2 539 30.2
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 5.5e-34 149.8 540 28.7
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 5.5e-34 149.8 614 28.8
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 2.1e-33 147.9 480 28.3
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 6.1e-33 146.4 574 28.4
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 1.0e-32 145.6 623 28.7
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 3.0e-32 144.1 608 28.6
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 1.5e-31 141.7 611 28.8
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 2.0e-31 141.4 545 29.5
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 2.6e-31 141.0 538 29.4
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 9.8e-31 139.0 597 29.0
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 1.7e-30 138.3 547 28.7
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 3.7e-30 137.1 628 28.0
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 3.1e-29 134.0 647 27.2
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 9.2e-29 132.5 639 29.1
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 2.9e-27 127.5 591 27.9
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 6.6e-27 126.3 543 27.4
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 3.3e-26 124.0 119 55.5
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 7.3e-26 122.9 486 29.8
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 1.2e-25 122.1 122 51.6
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 2.8e-25 120.9 562 26.9
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 2.8e-25 120.9 252 37.3
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 8.0e-25 119.4 644 27.2
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 4.0e-24 117.1 524 28.4
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 6.8e-24 116.3 234 35.9
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 2.0e-23 114.8 663 26.5
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 4.4e-23 113.6 363 35.3
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 9.8e-23 112.5 389 30.3
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 4.9e-22 110.2 389 29.8
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 1.1e-21 109.0 128 46.1
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 2.7e-20 104.4 584 26.5
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 4.6e-20 103.6 147 42.2
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.3e-19 102.1 122 45.9
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 4.3e-18 97.1 330 30.6
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 1.6e-17 95.1 527 24.3
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 3.6e-17 94.0 313 35.5
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 4.7e-17 93.6 257 32.3
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 1.8e-16 91.7 306 26.8
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.9e-13 81.6 101 43.6
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 4.1e-13 80.5 101 42.6
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 1.2e-12 79.0 364 28.8
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 3.5e-12 77.4 183 28.4
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 1.9e-10 71.6 130 38.5
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 2.5e-10 71.2 118 36.4
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 2.5e-10 71.2 115 34.8
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 2.5e-10 71.2 149 32.9
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 1.6e-09 68.6 153 32.0
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 2.1e-09 68.2 123 31.7
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.1e-09 68.2 123 31.7
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.1e-09 68.2 123 31.7
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.1e-09 68.2 123 31.7
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.8e-09 67.8 123 31.7
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.8e-09 67.8 123 31.7
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 2.8e-09 67.8 115 33.0
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 2.8e-09 67.8 123 31.7
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 3.6e-09 67.4 149 32.2
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 3.6e-09 67.4 173 28.9
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 4.7e-09 67.0 149 30.9
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 4.7e-09 67.0 115 35.7
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 6.2e-09 66.6 123 32.5
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 8.1e-09 66.2 165 31.5
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 1.1e-08 65.9 112 33.9
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 1.1e-08 65.9 129 32.6
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 1.4e-08 65.5 115 33.9
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 1.4e-08 65.5 115 33.0
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 1.8e-08 65.1 115 31.3
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 1.8e-08 65.1 115 33.0
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 2.3e-08 64.7 115 33.0
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 2.3e-08 64.7 107 37.4
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 3.1e-08 64.3 158 30.4
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 4.0e-08 63.9 112 33.9
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 5.2e-08 63.5 115 33.0
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 5.2e-08 63.5 112 34.8
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 5.2e-08 63.5 146 29.5
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 6.8e-08 63.2 116 33.6
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 8.9e-08 62.8 123 31.7
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 1.2e-07 62.4 115 33.0
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 1.2e-07 62.4 115 32.2
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 1.5e-07 62.0 115 31.3
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 1.5e-07 62.0 115 33.0
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 1.5e-07 62.0 118 33.9
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 2.0e-07 61.6 149 30.2
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 2.0e-07 61.6 115 33.0
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 2.6e-07 61.2 158 29.1
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 3.4e-07 60.8 116 30.2
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 3.4e-07 60.8 149 28.9
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 3.4e-07 60.8 149 30.2
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 3.4e-07 60.8 112 33.0
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 4.4e-07 60.5 116 29.3
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 5.8e-07 60.1 149 30.9
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 5.8e-07 60.1 112 33.0
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 5.8e-07 60.1 162 29.6
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 5.8e-07 60.1 115 33.9
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 7.5e-07 59.7 116 30.2
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 7.5e-07 59.7 129 28.7
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 7.5e-07 59.7 547 25.0
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 9.8e-07 59.3 115 31.3
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 9.8e-07 59.3 116 30.2
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 9.8e-07 59.3 116 30.2
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 9.8e-07 59.3 149 31.5
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 9.8e-07 59.3 112 33.0
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 1.3e-06 58.9 115 31.3
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 1.7e-06 58.5 112 33.0
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 1.7e-06 58.5 115 28.7
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 1.7e-06 58.5 115 30.4
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.7e-06 58.5 149 28.9
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 2.2e-06 58.2 263 24.7
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 2.2e-06 58.2 151 29.1
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 2.2e-06 58.2 115 29.6
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 2.9e-06 57.8 116 29.3
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 2.9e-06 57.8 116 29.3
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 3.7e-06 57.4 112 32.1
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 6.4e-06 56.6 114 31.6
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 6.4e-06 56.6 112 30.4


User provided reference genes

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