Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22627 Striga asiatica HOM05D003579 ORTHO05D004266 5.1e-125 451.1 224 100.0
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 2.7e-41 172.9 115 79.1
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 4.0e-37 159.1 131 65.6
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 6.9e-37 158.3 129 65.1
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 9.0e-37 157.9 120 70.8
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 1.5e-36 157.1 129 64.3
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 1.3e-35 154.1 129 62.8
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 3.2e-34 149.4 130 60.8
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 4.2e-34 149.1 129 60.5
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 4.2e-34 149.1 129 62.0
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 7.1e-34 148.3 130 60.8
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 1.2e-33 147.5 115 64.3
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 1.2e-33 147.5 129 62.8
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 1.2e-33 147.5 115 66.1
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 1.6e-33 147.1 129 61.2
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 2.7e-33 146.4 116 64.7
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 3.5e-33 146.0 129 59.7
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 3.5e-33 146.0 129 62.8
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 3.5e-33 146.0 129 62.8
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.6e-33 145.6 115 65.2
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.6e-33 145.6 115 65.2
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 4.6e-33 145.6 115 65.2
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 6.0e-33 145.2 129 60.5
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 7.9e-33 144.8 116 65.5
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 7.9e-33 144.8 116 63.8
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 1.0e-32 144.4 129 59.7
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 1.0e-32 144.4 129 58.1
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 1.3e-32 144.1 117 62.4
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 1.3e-32 144.1 115 64.3
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 1.3e-32 144.1 115 64.3
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 1.3e-32 144.1 115 64.3
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 1.3e-32 144.1 130 60.8
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 1.3e-32 144.1 129 60.5
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.3e-32 144.1 115 64.3
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 1.8e-32 143.7 115 62.6
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 1.8e-32 143.7 121 65.3
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 1.8e-32 143.7 121 65.3
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 2.3e-32 143.3 115 63.5
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 2.3e-32 143.3 129 61.2
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 2.3e-32 143.3 115 64.3
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 2.3e-32 143.3 129 59.7
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 3.0e-32 142.9 115 63.5
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 3.0e-32 142.9 116 62.9
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 3.9e-32 142.5 115 63.5
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 3.9e-32 142.5 129 58.9
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 3.9e-32 142.5 115 63.5
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 5.1e-32 142.1 115 61.7
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 5.1e-32 142.1 129 58.1
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 5.1e-32 142.1 129 58.1
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 5.1e-32 142.1 115 64.3
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 6.7e-32 141.7 115 63.5
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 6.7e-32 141.7 117 64.1
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 6.7e-32 141.7 115 63.5
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 6.7e-32 141.7 115 62.6
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.7e-32 141.7 115 62.6
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 6.7e-32 141.7 116 62.1
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.1e-31 141.0 111 63.1
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.1e-31 141.0 116 62.9
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 1.5e-31 140.6 115 65.2
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 1.5e-31 140.6 115 60.9
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 1.5e-31 140.6 116 61.2
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.5e-31 140.6 115 62.6
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 1.9e-31 140.2 115 64.3
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 1.9e-31 140.2 117 60.7
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 2.5e-31 139.8 115 62.6
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.5e-31 139.8 115 61.7
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 2.5e-31 139.8 130 58.5
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 3.3e-31 139.4 115 61.7
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 4.3e-31 139.0 115 60.0
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 4.3e-31 139.0 116 62.9
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 4.3e-31 139.0 115 62.6
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 5.6e-31 138.7 129 56.6
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 5.6e-31 138.7 117 59.8
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 7.4e-31 138.3 129 57.4
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 7.4e-31 138.3 129 57.4
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 7.4e-31 138.3 115 62.6
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 9.6e-31 137.9 115 60.0
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 9.6e-31 137.9 129 56.6
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 9.6e-31 137.9 129 58.1
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 9.6e-31 137.9 132 57.6
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 9.6e-31 137.9 115 63.5
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 1.3e-30 137.5 115 62.6
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.6e-30 137.1 117 60.7
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 1.6e-30 137.1 130 55.4
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 2.8e-30 136.3 115 63.5
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 2.8e-30 136.3 129 57.4
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 3.7e-30 136.0 115 59.1
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 4.8e-30 135.6 115 61.7
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.8e-30 135.6 118 58.5
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 8.1e-30 134.8 116 62.9
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 1.4e-29 134.0 118 58.5
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 1.4e-29 134.0 115 61.7
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 2.4e-29 133.3 117 59.8
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 2.4e-29 133.3 129 55.8
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 3.1e-29 132.9 115 60.9
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 3.1e-29 132.9 115 57.4
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 4.0e-29 132.5 107 62.6
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 4.0e-29 132.5 115 60.0
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 5.3e-29 132.1 117 57.3
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 6.9e-29 131.7 115 60.0
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 1.5e-28 130.6 115 59.1
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 1.5e-28 130.6 116 59.5
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 2.0e-28 130.2 109 63.3
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 2.6e-28 129.8 129 56.6
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 7.6e-28 128.3 132 56.8
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 1.3e-27 127.5 121 56.2
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 6.5e-27 125.2 115 57.4
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 8.4e-27 124.8 111 56.8
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 8.4e-27 124.8 115 57.4
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.1e-26 124.4 115 56.5
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 1.9e-26 123.6 153 50.3
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 9.3e-26 121.3 107 58.9
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 9.3e-26 121.3 121 53.7
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 9.3e-26 121.3 106 58.5
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 1.6e-25 120.6 107 55.1
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 1.3e-24 117.5 128 50.8
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 3.0e-24 116.3 116 55.2
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 3.9e-24 115.9 128 50.8
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 6.7e-24 115.2 97 62.9
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 1.5e-23 114.0 109 51.4
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 1.9e-23 113.6 107 53.3
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 2.5e-23 113.2 130 52.3
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 2.5e-23 113.2 116 52.6
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 9.6e-23 111.3 121 49.6
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 2.1e-22 110.2 153 46.4
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 3.7e-22 109.4 87 63.2
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 4.8e-22 109.0 115 48.7
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 4.8e-22 109.0 93 63.4
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 8.2e-22 108.2 109 54.1
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 3.1e-21 106.3 112 51.8
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.3e-19 100.9 107 48.6
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 1.4e-18 97.4 102 53.9
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 7.9e-17 91.7 54 74.1
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 2.4e-13 80.1 52 65.4
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 4.1e-13 79.3 70 61.4
Lsat_1_v5_gn_4_76120 Lactuca sativa HOM05D002699 ORTHO05D002931 1.3e-11 74.3 79 49.4
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 5.0e-11 72.4 71 53.5
Lsat_1_v5_gn_6_63160 Lactuca sativa HOM05D002699 ORTHO05D002931 1.0e-08 64.7 73 52.1
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 2.3e-08 63.5 108 36.1
Lsat_1_v5_gn_6_16260 Lactuca sativa HOM05D003579 ORTHO05D025634 1.1e-07 61.2 68 47.1
Lsat_1_v5_gn_6_17001 Lactuca sativa HOM05D003579 ORTHO05D025634 3.3e-07 59.7 68 48.5
Lsat_1_v5_gn_5_188701 Lactuca sativa HOM05D003579 ORTHO05D025634 4.4e-07 59.3 71 45.1
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 7.4e-07 58.5 59 57.6
Lj3g0016828 Lotus japonicus HOM05D003579 ORTHO05D004266 8.2e-06 55.1 102 36.3


User provided reference genes

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