Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 2.7e-56 221.9 120 100.0
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 1.7e-45 186.0 120 81.7
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 3.1e-44 181.8 120 79.2
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 3.4e-43 178.3 120 79.2
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 3.4e-43 178.3 120 74.2
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 1.0e-42 176.8 120 73.3
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 1.0e-42 176.8 120 76.7
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.4e-41 172.9 121 71.9
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 4.2e-41 171.4 120 72.5
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 9.4e-41 170.2 120 70.0
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 9.4e-41 170.2 120 70.0
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.6e-40 169.5 117 72.6
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 1.6e-40 169.5 120 71.7
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 4.7e-40 167.9 120 70.0
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 4.7e-40 167.9 116 70.7
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 4.7e-40 167.9 116 70.7
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 3.9e-39 164.9 121 69.4
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 2.0e-38 162.5 122 68.9
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 2.0e-38 162.5 117 70.1
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 2.6e-38 162.2 120 68.3
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 4.4e-38 161.4 119 68.1
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 9.7e-38 160.2 117 69.2
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 1.7e-37 159.5 124 66.9
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 1.7e-37 159.5 117 70.9
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 8.2e-37 157.1 121 70.2
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 1.4e-36 156.4 124 67.7
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 2.4e-36 155.6 121 69.4
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 2.4e-36 155.6 120 65.0
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 2.4e-36 155.6 123 67.5
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 4.1e-36 154.8 119 67.2
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 4.1e-36 154.8 122 70.5
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 9.1e-36 153.7 118 66.9
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 1.2e-35 153.3 118 66.9
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.5e-35 152.9 121 66.9
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.5e-35 152.9 121 66.9
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.5e-35 152.9 121 66.9
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 2.6e-35 152.1 120 68.3
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 3.5e-35 151.8 118 63.6
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 5.9e-35 151.0 116 67.2
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 5.9e-35 151.0 121 66.1
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 5.9e-35 151.0 121 66.1
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 7.7e-35 150.6 124 65.3
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 7.7e-35 150.6 121 66.9
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 7.7e-35 150.6 121 66.9
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.0e-34 150.2 118 68.6
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 2.2e-34 149.1 123 65.0
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 3.8e-34 148.3 115 67.0
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 5.0e-34 147.9 121 65.3
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 6.5e-34 147.5 118 66.1
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 8.5e-34 147.1 111 70.3
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 8.5e-34 147.1 111 70.3
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 8.5e-34 147.1 111 70.3
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 8.5e-34 147.1 111 70.3
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 1.1e-33 146.7 126 62.7
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.1e-33 146.7 118 66.1
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.1e-33 146.7 118 66.1
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.1e-33 146.7 118 66.1
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.1e-33 146.7 120 66.7
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 1.9e-33 146.0 119 66.4
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 1.9e-33 146.0 116 64.7
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 2.5e-33 145.6 111 68.5
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 2.5e-33 145.6 118 65.3
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 5.5e-33 144.4 117 65.8
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 5.5e-33 144.4 116 65.5
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 5.5e-33 144.4 119 63.0
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 7.2e-33 144.1 121 66.1
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 7.2e-33 144.1 121 65.3
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 9.4e-33 143.7 120 65.8
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 2.1e-32 142.5 112 69.6
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 2.1e-32 142.5 112 69.6
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 2.1e-32 142.5 119 63.9
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 3.6e-32 141.7 111 67.6
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 6.1e-32 141.0 119 66.4
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 8.0e-32 140.6 117 63.2
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 1.4e-31 139.8 120 59.2
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 2.3e-31 139.0 122 63.1
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 5.2e-31 137.9 118 62.7
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 1.1e-30 136.7 118 61.0
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.5e-30 136.3 121 63.6
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 2.6e-30 135.6 99 69.7
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 4.4e-30 134.8 98 69.4
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 4.4e-30 134.8 107 68.2
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 7.4e-30 134.0 100 69.0
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 7.4e-30 134.0 118 60.2
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 9.7e-30 133.7 100 68.0
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 9.7e-30 133.7 91 73.6
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.3e-29 133.3 100 69.0
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 2.2e-29 132.5 122 59.0
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 4.8e-29 131.3 96 67.7
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 6.3e-29 131.0 108 62.0
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 3.1e-28 128.6 91 71.4
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 4.1e-28 128.3 97 68.0
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 3.5e-27 125.2 92 67.4
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 1.0e-26 123.6 114 58.8
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.3e-26 123.2 114 59.6
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 1.3e-26 123.2 92 67.4
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 2.5e-25 119.0 123 54.5
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 3.2e-25 118.6 114 58.8
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 3.2e-25 118.6 116 52.6
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 4.7e-24 114.8 120 53.3
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 6.1e-24 114.4 99 64.6
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 8.0e-24 114.0 120 53.3
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 1.4e-23 113.2 99 63.6
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 5.2e-23 111.3 96 59.4
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 5.2e-23 111.3 96 59.4
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 2.6e-22 109.0 122 58.2
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 2.2e-21 105.9 113 53.1
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 6.3e-21 104.4 107 57.0
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 7.0e-20 100.9 112 51.8
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 4.5e-19 98.2 108 53.7
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.9e-17 92.8 80 61.2
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 5.5e-17 91.3 109 51.4
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 2.1e-16 89.4 125 47.2
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.8e-15 86.3 87 55.2
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 2.3e-15 85.9 117 44.4
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 8.8e-15 84.0 92 54.3
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 4.4e-14 81.6 123 42.3
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 4.5e-11 71.6 110 41.8
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 9.5e-09 63.9 52 59.6
Dinv44367 Davidia involucrata HOM05D010970 ORTHO05D012912 1.0e-07 60.5 43 72.1


User provided reference genes

Program Settings