Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 2771.1 1434 100.0
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1796.6 1450 66.8
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1599.3 1456 61.3
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1449.9 1439 57.3
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1418.7 1440 55.6
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1411.0 1473 54.5
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1410.2 1467 54.3
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1396.7 1466 54.6
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1390.2 1440 54.9
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1367.4 1436 53.9
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1359.0 1460 53.2
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1355.1 1417 53.3
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1335.9 1354 54.7
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1333.2 1432 52.6
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1313.1 1428 51.1
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1293.1 1435 51.6
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1284.2 1443 51.6
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1282.3 1445 50.7
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1278.5 1451 50.4
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1277.3 1307 54.2
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1268.8 1428 51.3
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1256.5 1442 50.3
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1251.1 1258 55.3
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1242.6 1446 48.7
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1236.9 1461 49.5
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1229.9 1471 49.4
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1228.4 1444 48.8
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1226.8 1452 48.8
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1225.7 1446 48.8
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1220.3 1272 53.1
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1218.0 1441 48.7
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1213.4 1450 48.4
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1206.4 1443 49.3
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1204.9 1258 52.2
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1203.7 1434 48.5
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1203.0 1461 47.7
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1196.8 1456 47.0
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1192.9 1276 52.4
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1184.5 1450 47.5
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1159.1 1447 47.3
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1150.2 1426 47.0
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1149.4 1444 46.2
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1147.1 1364 48.0
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1146.0 1263 50.8
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1145.2 1363 48.1
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1142.5 1462 46.3
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1140.6 1258 50.4
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1134.4 1430 47.4
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1133.2 1405 47.2
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1121.7 1425 46.1
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1120.9 1402 46.6
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1117.4 1421 46.6
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1108.6 1434 46.1
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1084.7 1233 50.3
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 1.6e-309 1066.6 1204 50.4
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 3.2e-305 1052.4 722 75.6
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 3.7e-293 1012.3 1425 43.2
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 2.8e-285 986.1 1122 49.9
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 1.2e-275 954.1 1060 49.9
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 9.5e-273 944.5 1148 46.7
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 4.7e-272 942.2 1449 40.5
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 4.0e-263 912.5 1391 40.1
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.5e-262 910.6 881 57.7
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 2.0e-259 900.2 1072 48.6
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 2.0e-259 900.2 1159 46.0
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 3.1e-255 886.3 1061 47.6
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 5.2e-255 885.6 1465 40.1
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 4.4e-254 882.5 1066 47.2
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.9e-249 867.1 882 55.8
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 2.4e-223 780.4 1367 37.5
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 3.4e-206 723.4 1463 35.0
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 1.0e-202 711.8 937 45.5
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 4.5e-198 696.4 715 55.1
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 1.5e-193 681.4 1040 42.5
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 3.8e-181 640.2 1464 33.6
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 1.5e-177 628.2 621 57.3
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 1.3e-176 625.2 1453 32.3
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 4.8e-176 623.2 668 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 4.5e-174 616.7 1378 33.5
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 4.5e-174 616.7 1402 33.5
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 6.1e-163 579.7 490 65.7
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 6.4e-104 383.6 1329 26.4
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 2.5e-84 318.5 352 50.3
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 1.8e-82 312.4 292 57.2
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 5.7e-68 264.2 263 54.8
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 7.0e-66 257.3 353 47.6
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 2.6e-65 255.4 291 54.0
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 1.5e-52 213.0 264 48.9
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 1.0e-40 173.7 207 51.2
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 7.3e-31 141.0 124 64.5
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 5.4e-26 124.8 285 32.3
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.2e-25 123.6 104 66.3
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 8.9e-21 107.5 105 53.3
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 1.1e-18 100.5 147 46.9
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 8.1e-14 84.3 113 43.4
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 1.2e-12 80.5 84 51.2
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 9.2e-10 70.9 277 24.9
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 8.1e-06 57.8 91 37.4


User provided reference genes

Program Settings