Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 1.1e-90 336.7 167 100.0
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 2.1e-59 232.6 169 72.8
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 2.8e-59 232.3 173 71.1
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.3e-51 206.8 185 66.5
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 1.6e-51 206.5 179 64.2
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.4e-50 203.4 181 64.6
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.4e-50 203.4 191 62.8
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 3.4e-49 198.7 192 60.4
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 3.4e-49 198.7 185 62.7
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 7.6e-49 197.6 192 63.0
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 2.2e-48 196.1 180 62.8
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.1e-47 193.7 174 63.8
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.1e-47 193.7 198 57.6
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.5e-47 192.6 177 59.3
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.2e-47 191.8 181 64.1
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 7.1e-47 191.0 183 59.0
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 9.3e-47 190.7 181 62.4
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.6e-46 189.9 193 59.6
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 7.9e-46 187.6 186 60.8
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 5.1e-45 184.9 192 59.9
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 8.7e-45 184.1 182 59.3
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 4.3e-44 181.8 187 56.7
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.3e-43 180.3 182 60.4
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.6e-43 179.9 194 57.7
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 2.2e-43 179.5 163 64.4
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.8e-43 179.1 193 54.9
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 4.8e-43 178.3 198 54.0
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 6.3e-43 177.9 185 58.4
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 8.2e-43 177.6 194 56.2
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 1.8e-42 176.4 183 57.9
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 2.4e-42 176.0 182 56.6
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 5.3e-42 174.9 190 56.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 5.3e-42 174.9 185 55.7
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 9.0e-42 174.1 186 55.4
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 9.0e-42 174.1 189 55.6
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.2e-41 173.7 185 56.2
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.5e-41 173.3 190 55.8
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 2.0e-41 172.9 185 56.8
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 2.0e-41 172.9 181 53.0
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 2.0e-41 172.9 183 56.3
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 3.4e-41 172.2 185 56.2
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 4.5e-41 171.8 182 54.4
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 4.5e-41 171.8 183 56.3
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.5e-41 171.8 182 58.2
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 7.6e-41 171.0 191 55.0
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.7e-40 169.9 189 56.1
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.7e-40 169.9 195 55.9
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 2.2e-40 169.5 171 57.3
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.8e-40 168.7 181 56.4
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 5.0e-40 168.3 184 54.3
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 5.0e-40 168.3 184 54.3
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 6.5e-40 167.9 171 55.6
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 6.5e-40 167.9 171 56.7
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.1e-39 167.2 180 55.6
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.4e-39 166.8 185 56.2
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.5e-39 166.0 184 54.9
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.5e-39 166.0 184 54.9
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.5e-39 166.0 184 54.9
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 4.2e-39 165.2 181 54.7
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 5.5e-39 164.9 187 54.0
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.6e-38 162.2 185 55.1
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.6e-38 161.8 184 55.4
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 6.1e-38 161.4 188 52.1
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 6.1e-38 161.4 183 54.6
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 7.9e-38 161.0 191 52.9
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.0e-37 160.6 190 52.1
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.8e-37 159.8 192 53.1
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.3e-37 159.5 192 53.1
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.3e-37 159.5 183 54.6
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.0e-37 159.1 186 53.2
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 6.7e-37 157.9 184 56.5
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.5e-36 156.8 182 55.5
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.5e-36 156.8 189 54.5
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 3.3e-36 155.6 191 53.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 5.7e-36 154.8 185 54.6
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.3e-35 153.7 191 52.9
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 1.3e-35 153.7 194 52.1
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.3e-35 153.7 212 46.7
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.7e-35 153.3 203 48.8
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.2e-35 152.9 197 49.2
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 2.2e-35 152.9 186 51.1
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 6.3e-35 151.4 186 51.1
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 8.2e-35 151.0 189 50.3
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.4e-34 150.2 189 49.2
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 3.1e-34 149.1 173 52.0
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 4.1e-34 148.7 191 47.1
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 6.9e-34 147.9 189 49.2
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.5e-33 146.7 192 49.0
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 2.0e-33 146.4 189 51.9
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.6e-33 146.0 184 52.2
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 3.4e-33 145.6 169 55.6
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 5.9e-33 144.8 177 52.5
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 7.7e-33 144.4 183 49.7
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 1.3e-32 143.7 181 51.4
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.7e-32 143.3 169 53.8
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 2.2e-32 142.9 173 49.7
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 5.0e-32 141.7 200 46.0
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.0e-32 141.7 187 49.7
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 8.5e-32 141.0 169 52.7
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 8.5e-32 141.0 169 52.7
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 8.5e-32 141.0 169 52.7
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 1.4e-31 140.2 175 52.0
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.2e-31 138.7 202 50.5
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 4.2e-31 138.7 175 49.7
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 7.2e-31 137.9 182 48.9
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 9.4e-31 137.5 201 48.8
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.6e-30 136.7 189 47.6
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 2.1e-30 136.3 170 50.6
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 2.1e-30 136.3 183 48.6
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 7.9e-30 134.4 184 47.8
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.8e-29 133.3 192 47.9
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.8e-29 133.3 197 47.2
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.8e-29 133.3 190 44.7
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 2.3e-29 132.9 209 45.0
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 2.3e-29 132.9 209 45.0
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 5.7e-28 128.3 214 43.0
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 5.7e-28 128.3 174 50.0
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.3e-27 127.1 181 45.3
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.3e-27 127.1 181 45.3
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.3e-27 127.1 189 46.0
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.3e-27 127.1 189 46.0
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 1.7e-27 126.7 199 44.2
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 2.2e-27 126.3 198 45.5
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 2.8e-27 125.9 190 45.8
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 2.8e-27 125.9 190 45.8
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.4e-26 123.6 205 42.9
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.8e-26 123.2 197 42.6
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 5.3e-26 121.7 170 44.1
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 2.9e-24 115.9 82 72.0
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.8e-24 115.5 180 42.8
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 3.2e-23 112.5 170 43.5
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.9e-21 105.5 177 40.7
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 3.3e-20 102.4 175 42.9
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 3.7e-19 99.0 191 38.7
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 8.2e-19 97.8 168 41.1
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 3.1e-18 95.9 182 39.0
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 3.1e-18 95.9 171 43.3
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 5.9e-17 91.7 74 64.9
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.7e-17 91.3 83 59.0
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 5.0e-16 88.6 153 37.9
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 4.7e-14 82.0 77 59.7
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 4.7e-14 82.0 154 40.9
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 2.8e-11 72.8 55 69.1
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 8.2e-11 71.2 179 31.8
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 4.1e-10 68.9 178 34.3
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 5.3e-10 68.6 177 33.3
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 9.1e-10 67.8 77 51.9
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 9.1e-10 67.8 173 31.8
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.2e-09 67.4 43 72.1
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 1.6e-09 67.0 146 38.4
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 2.9e-08 62.8 174 32.8
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 5.0e-08 62.0 172 29.7
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 8.5e-08 61.2 164 36.0
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.9e-07 60.1 173 30.6
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 2.5e-07 59.7 180 29.4
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 4.2e-07 58.9 177 32.8
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 7.2e-07 58.2 178 32.0
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 7.2e-07 58.2 182 25.3
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 3.6e-06 55.8 165 30.3
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 3.6e-06 55.8 174 27.0
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 3.6e-06 55.8 178 30.3
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 4.7e-06 55.5 181 30.9
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 4.7e-06 55.5 162 28.4
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 4.7e-06 55.5 178 27.0
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 6.1e-06 55.1 165 30.3
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 6.1e-06 55.1 175 28.0
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 8.0e-06 54.7 181 28.7


User provided reference genes

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