Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 3.7e-106 388.3 200 100.0
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 4.9e-103 377.9 200 97.5
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 4.9e-103 377.9 200 97.5
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-89 332.0 200 89.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 4.1e-89 331.6 199 88.9
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-88 330.1 199 88.4
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.6e-88 328.9 200 88.0
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 9.7e-67 257.3 219 70.3
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.2e-64 250.4 219 68.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-63 246.9 153 86.3
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 5.0e-63 245.0 220 67.7
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.4e-59 231.9 209 64.6
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 9.7e-59 230.7 220 63.2
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.2e-58 229.6 265 57.4
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.1e-57 227.3 218 61.9
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.1e-57 227.3 215 63.7
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.7e-56 222.6 218 62.8
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 4.5e-56 221.9 213 60.6
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 7.7e-56 221.1 218 62.4
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 7.7e-56 221.1 213 60.1
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.2e-55 219.5 207 64.3
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.5e-54 216.9 218 60.6
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.5e-54 214.9 207 63.3
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 7.2e-54 214.5 225 59.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 9.4e-54 214.2 189 65.1
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-53 213.4 211 60.2
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.1e-53 213.0 193 65.3
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.1e-53 213.0 193 65.3
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 2.1e-53 213.0 213 61.5
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 4.7e-53 211.8 217 61.3
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 8.0e-53 211.1 218 59.6
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.0e-52 210.7 222 59.9
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.0e-52 210.7 220 59.5
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.4e-52 210.3 221 59.7
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.3e-52 209.5 219 59.8
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 2.3e-52 209.5 157 75.2
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 3.0e-52 209.1 221 57.9
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 3.0e-52 209.1 178 69.1
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 5.2e-52 208.4 155 74.2
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 6.8e-52 208.0 219 59.8
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.2e-51 207.2 217 57.1
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.5e-51 206.8 219 56.2
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 2.6e-51 206.1 216 59.7
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 3.4e-51 205.7 222 57.2
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 3.4e-51 205.7 218 58.3
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 4.4e-51 205.3 155 72.3
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 4.4e-51 205.3 219 59.8
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 4.4e-51 205.3 219 59.8
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 4.4e-51 205.3 212 60.8
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 5.7e-51 204.9 218 59.2
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 7.5e-51 204.5 216 58.3
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.3e-50 203.8 222 57.2
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.3e-50 203.8 222 57.2
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.3e-50 203.8 218 59.2
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.7e-50 203.4 219 59.4
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.2e-50 203.0 155 71.6
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.8e-50 202.6 220 57.3
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 6.3e-50 201.4 218 58.7
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 8.3e-50 201.1 155 73.5
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.1e-49 200.7 158 71.5
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.4e-49 200.3 225 56.4
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.8e-49 199.9 219 56.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.8e-49 199.9 178 63.5
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.4e-49 199.5 221 57.5
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.4e-49 199.5 219 56.6
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 3.1e-49 199.1 156 71.2
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 4.1e-49 198.7 155 72.9
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.1e-49 198.7 154 70.1
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 4.1e-49 198.7 213 56.8
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 5.4e-49 198.4 156 70.5
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 5.4e-49 198.4 155 71.0
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 7.0e-49 198.0 224 57.6
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 7.0e-49 198.0 215 58.1
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 7.0e-49 198.0 154 72.1
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-48 196.8 251 50.2
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.6e-48 196.8 213 57.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.0e-48 196.4 219 57.5
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 3.5e-48 195.7 178 61.8
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.5e-48 195.3 155 69.0
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 5.9e-48 194.9 220 56.8
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 5.9e-48 194.9 220 58.6
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 5.9e-48 194.9 173 63.6
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 5.9e-48 194.9 152 67.8
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 7.7e-48 194.5 216 57.4
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.0e-47 194.1 221 56.1
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.3e-47 193.7 155 69.7
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.7e-47 193.4 154 67.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.7e-47 193.4 178 61.2
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.7e-47 193.4 139 74.1
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 2.3e-47 193.0 220 54.5
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.3e-47 193.0 182 60.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.9e-47 192.6 155 68.4
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.9e-47 192.6 169 63.9
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.8e-47 192.2 152 67.1
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 3.8e-47 192.2 219 55.7
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 5.0e-47 191.8 216 55.1
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 6.5e-47 191.4 222 54.1
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 6.5e-47 191.4 162 66.7
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.1e-46 190.7 227 52.4
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.5e-46 190.3 197 57.4
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 7.2e-46 188.0 98 95.9
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.2e-45 187.2 155 69.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.1e-45 186.4 189 57.1
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 2.1e-45 186.4 155 65.2
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 2.1e-45 186.4 187 58.3
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.1e-45 186.4 219 53.4
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 3.6e-45 185.7 158 67.1
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 3.6e-45 185.7 158 67.1
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 3.6e-45 185.7 155 65.8
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 4.7e-45 185.3 155 64.5
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 4.7e-45 185.3 154 66.2
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 6.1e-45 184.9 222 52.7
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.0e-44 184.1 227 52.4
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.4e-44 183.7 155 65.2
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.8e-44 183.3 226 51.8
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.3e-44 183.0 155 63.9
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.3e-44 183.0 155 64.5
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.3e-44 183.0 157 65.6
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 4.0e-44 182.2 187 56.7
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.0e-44 182.2 155 66.5
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 5.2e-44 181.8 201 55.7
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 5.2e-44 181.8 155 63.2
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 8.9e-44 181.0 155 62.6
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.0e-43 179.9 155 65.2
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 2.0e-43 179.9 153 65.4
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.6e-43 179.5 201 55.7
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.7e-42 176.8 221 50.7
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.2e-42 176.4 167 62.3
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 2.8e-42 176.0 138 68.8
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 4.9e-42 175.3 191 55.5
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 8.3e-42 174.5 167 59.9
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.1e-41 174.1 155 60.6
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.1e-41 174.1 213 52.1
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.4e-41 173.7 155 63.2
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.4e-41 172.9 176 59.1
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 9.2e-41 171.0 192 55.7
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.6e-40 170.2 155 61.3
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.1e-37 159.8 195 51.3
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 6.1e-37 158.3 156 60.9
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.0e-37 157.9 156 54.5
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.6e-35 152.9 137 63.5
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 9.8e-35 151.0 235 46.8
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.7e-34 150.2 96 81.2
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.7e-34 149.1 157 57.3
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 6.4e-34 148.3 155 60.0
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 8.3e-34 147.9 189 50.3
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 7.8e-32 141.4 156 51.9
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.7e-31 140.2 122 63.1
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.2e-29 134.0 109 67.0
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 2.1e-29 133.3 106 68.9
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.4e-25 120.6 82 78.0
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 2.3e-23 113.2 159 49.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 8.6e-23 111.3 130 51.5
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 6.4e-18 95.1 137 48.9
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.1e-17 94.4 63 79.4
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.9e-17 93.6 119 45.4
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 4.3e-14 82.4 168 33.3
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 7.3e-14 81.6 154 34.4
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 5.8e-11 72.0 75 56.0
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 4.9e-10 68.9 125 32.0
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 7.1e-09 65.1 68 57.4
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 4.3e-06 55.8 41 70.7
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 7.3e-06 55.1 99 45.5


User provided reference genes

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