Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold674G53430 Striga asiatica HOM05D002962 ORTHO05D003280 2.6e-90 335.5 183 100.0
SGA_v2.0_scaffold693G53464 Striga asiatica HOM05D002962 ORTHO05D003280 9.2e-80 300.4 198 86.4
SGA_v2.0_scaffold521G52698 Striga asiatica HOM05D002962 ORTHO05D003280 1.2e-79 300.1 206 82.5
Migut.H02529 Erythranthe guttata HOM05D002962 ORTHO05D003280 1.5e-34 150.2 209 48.3
MSTRG.2480 Avicennia marina HOM05D002962 ORTHO05D003280 3.8e-33 145.6 208 46.2
Oeu027437.1 Olea europaea HOM05D002962 ORTHO05D003280 4.5e-26 122.1 207 44.9
SGA_v2.0_scaffold12G06303 Striga asiatica HOM05D002962 ORTHO05D003280 2.9e-25 119.4 209 42.6
Oeu012899.1 Olea europaea HOM05D002962 ORTHO05D003280 1.9e-24 116.7 208 44.2
CAN.G358.53 Capsicum annuum HOM05D002962 ORTHO05D003280 3.2e-24 115.9 199 43.2
Nitab4.5_0000178g0300 Nicotiana tabacum HOM05D002962 ORTHO05D003280 1.2e-23 114.0 202 41.6
SalBow8G0268 Salvia bowleyana HOM05D002962 ORTHO05D003280 1.6e-23 113.6 211 40.3
Peaxi162Scf00366g00712 Petunia axillaris HOM05D002962 ORTHO05D003280 3.0e-22 109.4 199 41.2
PGSC0003DMG400003520 Solanum tuberosum HOM05D002962 ORTHO05D003280 3.9e-22 109.0 208 38.5
Nitab4.5_0001617g0050 Nicotiana tabacum HOM05D002962 ORTHO05D003280 6.7e-22 108.2 199 39.2
Sopen02g029680 Solanum pennellii HOM05D002962 ORTHO05D003280 6.7e-22 108.2 126 54.0
Solyc02g085000.3 Solanum lycopersicum HOM05D002962 ORTHO05D003280 2.5e-21 106.3 208 38.5
Cc07_g09830 Coffea canephora HOM05D002962 ORTHO05D003280 4.3e-21 105.5 208 37.5
SGA_v2.0_scaffold4217G54447 Striga asiatica HOM05D002962 ORTHO05D003280 9.6e-21 104.4 56 98.2
Hma1.2p1_0224F.1_g094470 Hydrangea macrophylla HOM05D002962 ORTHO05D003280 2.8e-20 102.8 207 37.7
Manes.02G096200 Manihot esculenta HOM05D002962 ORTHO05D003280 7.6e-18 94.7 159 41.5
CSS0034307 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 1.0e-17 94.4 216 36.6
Lalb_Chr05g0212661 Lupinus albus HOM05D002962 ORTHO05D003280 3.2e-16 89.4 187 36.4
Cfa004337 Carpinus fangiana HOM05D002962 ORTHO05D003280 4.2e-16 89.0 198 35.9
DCAR_017305 Daucus carota HOM05D002962 ORTHO05D003280 7.1e-16 88.2 200 35.5
Cpa.g.sc36.5 Carica papaya HOM05D002962 ORTHO05D003280 1.2e-15 87.4 230 33.5
TWI73G0991 Tripterygium wilfordii HOM05D002962 ORTHO05D003280 1.6e-15 87.0 240 31.7
CiPaw.01G044300 Carya illinoinensis HOM05D002962 ORTHO05D003280 2.1e-15 86.7 217 33.2
vmacro17814 Vaccinium macrocarpon HOM05D002962 ORTHO05D003280 2.7e-15 86.3 206 34.0
FvH4_1g12900 Fragaria vesca HOM05D002962 ORTHO05D003280 3.5e-15 85.9 227 40.1
FAN19G1181 Fragaria x ananassa HOM05D002962 ORTHO05D003280 3.5e-15 85.9 227 40.1
FAN28G2586 Fragaria x ananassa HOM05D002962 ORTHO05D003280 3.5e-15 85.9 229 37.6
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 3.5e-15 85.9 137 40.1
Lalb_Chr09g0322191 Lupinus albus HOM05D002962 ORTHO05D003280 3.5e-15 85.9 137 46.0
Lsat_1_v5_gn_2_77380 Lactuca sativa HOM05D002962 ORTHO05D003280 4.6e-15 85.5 115 47.8
Lalb_Chr09g0333421 Lupinus albus HOM05D002962 ORTHO05D003280 7.9e-15 84.7 151 39.7
FAN26G1847 Fragaria x ananassa HOM05D002962 ORTHO05D003280 1.0e-14 84.3 229 37.1
TWI09G0980 Tripterygium wilfordii HOM05D002962 ORTHO05D003280 1.0e-14 84.3 233 32.6
unitig_736.g22639 Utricularia gibba HOM05D002962 ORTHO05D003280 1.0e-14 84.3 130 43.1
PGR119G1115 Punica granatum HOM05D002962 ORTHO05D003280 1.3e-14 84.0 149 43.0
Hund16634 Selenicereus undatus HOM05D002962 ORTHO05D003280 1.8e-14 83.6 128 45.3
Ciclev10025466m.g Citrus clementina HOM05D002962 ORTHO05D003280 2.3e-14 83.2 130 44.6
MD15G1257200 Malus domestica HOM05D002962 ORTHO05D003280 3.9e-14 82.4 113 46.9
FAN23G2353 Fragaria x ananassa HOM05D002962 ORTHO05D003280 5.1e-14 82.0 234 35.9
Prupe.7G157800 Prunus persica HOM05D002962 ORTHO05D003280 5.1e-14 82.0 107 48.6
VMungo0251G3100 Vigna mungo HOM05D002962 ORTHO05D003280 5.1e-14 82.0 149 40.3
RcHm_v2.0_Chr2g0100981 Rosa chinensis HOM05D002962 ORTHO05D003280 6.7e-14 81.6 229 36.2
TPR.G2377 Trifolium pratense HOM05D002962 ORTHO05D003280 6.7e-14 81.6 162 38.9
TAR376G0270 Trochodendron aralioides HOM05D002962 ORTHO05D003280 1.5e-13 80.5 206 34.0
Duzib147G1401 Durio zibethinus HOM05D002962 ORTHO05D003280 1.9e-13 80.1 135 40.7
Lj4g0019305 Lotus japonicus HOM05D002962 ORTHO05D003280 1.9e-13 80.1 147 39.5
Phvul.003G255500 Phaseolus vulgaris HOM05D002962 ORTHO05D003280 1.9e-13 80.1 148 38.5
Medtr8g077135 Medicago truncatula HOM05D002962 ORTHO05D003280 2.5e-13 79.7 127 40.9
Lj9C586T8 Lonicera japonica HOM05D002962 ORTHO05D003280 3.3e-13 79.3 204 35.3
Sc16g0002600 Simmondsia chinensis HOM05D002962 ORTHO05D003280 3.3e-13 79.3 158 39.2
Ca_22294_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 7.4e-13 78.2 146 37.0
Ca_22324_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 7.4e-13 78.2 146 37.0
Haze_15064 Corylus avellana HOM05D002962 ORTHO05D003280 7.4e-13 78.2 198 33.8
Glyma.16G135000 Glycine max HOM05D002962 ORTHO05D003280 7.4e-13 78.2 152 36.2
Duzib264G0441 Durio zibethinus HOM05D002962 ORTHO05D003280 1.3e-12 77.4 226 29.6
Nn1g04926 Nelumbo nucifera HOM05D002962 ORTHO05D003280 1.3e-12 77.4 166 37.3
CiPaw.02G020000 Carya illinoinensis HOM05D002962 ORTHO05D003280 1.6e-12 77.0 129 38.0
Medtr5g020870 Medicago truncatula HOM05D002962 ORTHO05D003280 1.6e-12 77.0 160 38.1
Psat4g094840 Pisum sativum HOM05D002962 ORTHO05D003280 1.6e-12 77.0 118 43.2
MD02G1143900 Malus domestica HOM05D002962 ORTHO05D003280 2.2e-12 76.6 107 45.8
Potri.005G120600 Populus trichocarpa HOM05D002962 ORTHO05D003280 2.2e-12 76.6 109 49.5
Thecc.01G031700 Theobroma cacao HOM05D002962 ORTHO05D003280 2.2e-12 76.6 135 40.7
Eucgr.I02415 Eucalyptus grandis HOM05D002962 ORTHO05D003280 2.8e-12 76.3 130 41.5
Manes.01G137800 Manihot esculenta HOM05D002962 ORTHO05D003280 4.8e-12 75.5 218 31.7
Sed0002223 Sechium edule HOM05D002962 ORTHO05D003280 1.1e-11 74.3 156 34.6
Cpa.g.sc6.150 Carica papaya HOM05D002962 ORTHO05D003280 3.1e-11 72.8 231 30.3
COL.COLO4_22042 Corchorus olitorius HOM05D002962 ORTHO05D003280 4.1e-11 72.4 225 30.2
BcaC07g39559 Brassica carinata HOM05D002962 ORTHO05D003280 5.3e-11 72.0 150 38.0
Sed0024753 Sechium edule HOM05D002962 ORTHO05D003280 5.3e-11 72.0 122 40.2
PGR102G1557 Punica granatum HOM05D002962 ORTHO05D003280 9.0e-11 71.2 161 34.8
Sabra07G0019200 Salix brachista HOM05D002962 ORTHO05D003280 9.0e-11 71.2 122 41.8
ECA238G1910 Erigeron canadensis HOM05D002962 ORTHO05D003280 1.2e-10 70.9 147 37.4
Lj2g0023270 Lotus japonicus HOM05D002962 ORTHO05D003280 1.2e-10 70.9 134 40.3
BolC8t50230H Brassica oleracea HOM05D002962 ORTHO05D003280 1.5e-10 70.5 151 37.1
Carub.0005s1730 Capsella rubella HOM05D002962 ORTHO05D003280 1.5e-10 70.5 135 42.2
ClCG01G019720 Citrullus lanatus HOM05D002962 ORTHO05D003280 1.5e-10 70.5 131 38.2
Glyma.01G172000 Glycine max HOM05D002962 ORTHO05D003280 1.5e-10 70.5 156 36.5
Atru.chr3.625 Acer truncatum HOM05D002962 ORTHO05D003280 2.0e-10 70.1 233 30.0
Ah.03g141110 Amaranthus hybridus HOM05D002962 ORTHO05D003280 2.0e-10 70.1 138 39.1
BcaC06g33069 Brassica carinata HOM05D002962 ORTHO05D003280 2.0e-10 70.1 129 41.9
BcaC06g33332 Brassica carinata HOM05D002962 ORTHO05D003280 2.0e-10 70.1 129 41.9
C08p26120 Brassica napus HOM05D002962 ORTHO05D003280 2.6e-10 69.7 155 37.4
Thhalv10010373m.g Eutrema salsugineum HOM05D002962 ORTHO05D003280 2.6e-10 69.7 152 35.5
HanXRQChr14g0440561 Helianthus annuus HOM05D002962 ORTHO05D003280 2.6e-10 69.7 104 42.3
MBI12_g33189_MAGBIO Magnolia biondii HOM05D002962 ORTHO05D003280 2.6e-10 69.7 146 36.3
THA.LOC104821299 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 2.6e-10 69.7 101 44.6
AT3G50910 Arabidopsis thaliana HOM05D002962 ORTHO05D003280 3.4e-10 69.3 153 37.3
Duzib187G1402 Durio zibethinus HOM05D002962 ORTHO05D003280 4.5e-10 68.9 134 39.6
Potri.007G022100 Populus trichocarpa HOM05D002962 ORTHO05D003280 4.5e-10 68.9 140 39.3
C07p46030 Brassica napus HOM05D002962 ORTHO05D003280 5.9e-10 68.6 129 41.1
BolC7t45121H Brassica oleracea HOM05D002962 ORTHO05D003280 5.9e-10 68.6 129 41.1
CANSAT01G3016 Cannabis sativa HOM05D002962 ORTHO05D003280 5.9e-10 68.6 226 32.7
QL06p047095 Quercus lobata HOM05D002962 ORTHO05D003280 5.9e-10 68.6 95 46.3
Sabra05G0099400 Salix brachista HOM05D002962 ORTHO05D003280 5.9e-10 68.6 155 38.1
BcaC06g33066 Brassica carinata HOM05D002962 ORTHO05D003280 1.0e-09 67.8 90 50.0
Sp5g11320 Schrenkiella parvula HOM05D002962 ORTHO05D003280 1.0e-09 67.8 137 40.1
Psat2g157840 Pisum sativum HOM05D002962 ORTHO05D003280 1.3e-09 67.4 151 36.4
BcaC06g33335 Brassica carinata HOM05D002962 ORTHO05D003280 1.7e-09 67.0 115 44.3
CARHR160480 Cardamine hirsuta HOM05D002962 ORTHO05D003280 2.2e-09 66.6 153 36.6
BcaB01g00566 Brassica carinata HOM05D002962 ORTHO05D003280 2.9e-09 66.2 119 40.3
TPR.G24105 Trifolium pratense HOM05D002962 ORTHO05D003280 2.9e-09 66.2 141 38.3
EL10As8g23915 Beta vulgaris HOM05D006011 ORTHO05D007421 3.8e-09 65.9 103 46.6
ECA232G3627 Erigeron canadensis HOM05D002962 ORTHO05D003003 3.8e-09 65.9 105 41.0
Gohir.D03G013000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 3.8e-09 65.9 103 42.7
Gorai.003G013300 Gossypium raimondii HOM05D002962 ORTHO05D003280 3.8e-09 65.9 103 42.7
Ah.02g125020 Amaranthus hybridus HOM05D002962 ORTHO05D003280 5.0e-09 65.5 103 43.7
Rhsim08G0119500 Rhododendron simsii HOM05D002962 ORTHO05D003280 5.0e-09 65.5 64 59.4
THA.LOC104819203 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 5.0e-09 65.5 163 35.0
BcaC09g50053 Brassica carinata HOM05D002962 ORTHO05D003280 6.5e-09 65.1 55 65.5
GSVIVG01018925001 Vitis vinifera HOM05D002962 ORTHO05D003280 6.5e-09 65.1 220 32.3
AL5G31270 Arabidopsis lyrata HOM05D002962 ORTHO05D003280 8.5e-09 64.7 163 35.6
Lsat_1_v5_gn_4_152501 Lactuca sativa HOM05D002962 ORTHO05D003280 8.5e-09 64.7 103 40.8
A03p48020 Brassica napus HOM05D002962 ORTHO05D003280 1.1e-08 64.3 121 40.5
A09p44020 Brassica napus HOM05D002962 ORTHO05D003280 1.1e-08 64.3 119 40.3
BraA03t13910Z Brassica rapa HOM05D002962 ORTHO05D003280 1.1e-08 64.3 133 39.1
BraA09t39860Z Brassica rapa HOM05D002962 ORTHO05D003280 1.1e-08 64.3 119 40.3
Gohir.A02G167000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 1.1e-08 64.3 216 29.2
ATR0568G222 Amborella trichopoda HOM05D002962 ORTHO05D003280 1.9e-08 63.5 102 43.1
Ca_24872_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 1.9e-08 63.5 158 34.8
arahy.Tifrunner.gnm1.ann1.6ZAY02 Arachis hypogaea HOM05D002962 ORTHO05D003280 2.5e-08 63.2 132 37.9
arahy.Tifrunner.gnm1.ann1.IG7GIS Arachis hypogaea HOM05D002962 ORTHO05D003280 2.5e-08 63.2 132 37.9
PSO764G0045 Papaver somniferum HOM05D002962 ORTHO05D003280 3.2e-08 62.8 107 38.3
Aa31LG4G19010 Aethionema arabicum HOM05D002962 ORTHO05D003280 4.2e-08 62.4 129 38.8
EL10Ac2g04839 Beta vulgaris HOM05D002462 ORTHO05D002893 4.2e-08 62.4 61 60.7
Eucgr.H03321 Eucalyptus grandis HOM05D002962 ORTHO05D003280 4.2e-08 62.4 56 60.7
HanXRQChr09g0261381 Helianthus annuus HOM05D002962 ORTHO05D003280 4.2e-08 62.4 106 36.8
PSO541G2482 Papaver somniferum HOM05D002962 ORTHO05D003280 5.5e-08 62.0 58 55.2
MELO3C007841.2 Cucumis melo HOM05D002962 ORTHO05D003280 7.2e-08 61.6 104 41.3
PSO170G2280 Papaver somniferum HOM05D002962 ORTHO05D003280 7.2e-08 61.6 107 38.3
BcaB05g23253 Brassica carinata HOM05D002962 ORTHO05D003280 9.4e-08 61.2 69 50.7
Thhalv10004394m.g Eutrema salsugineum HOM05D002962 ORTHO05D003280 1.2e-07 60.8 56 57.1
Nn5g29667 Nelumbo nucifera HOM05D002962 ORTHO05D003280 1.2e-07 60.8 182 32.4
PSO170G1953 Papaver somniferum HOM05D002962 ORTHO05D003280 1.2e-07 60.8 107 38.3
PSO761G0551 Papaver somniferum HOM05D002962 ORTHO05D003280 1.2e-07 60.8 107 38.3
AUR62007595 Chenopodium quinoa HOM05D002962 ORTHO05D003280 1.6e-07 60.5 126 38.1
Gohir.D12G063400 Gossypium hirsutum HOM05D002962 ORTHO05D003280 2.1e-07 60.1 136 34.6
Gorai.008G066700 Gossypium raimondii HOM05D002962 ORTHO05D003280 2.1e-07 60.1 136 34.6
AL8G45050 Arabidopsis lyrata HOM05D002962 ORTHO05D003280 2.7e-07 59.7 56 55.4
Glyma.11G071200 Glycine max HOM05D002962 ORTHO05D003280 2.7e-07 59.7 55 61.8
Gohir.A10G096000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 4.6e-07 58.9 147 33.3
BolC1t02897H Brassica oleracea HOM05D002962 ORTHO05D003280 6.1e-07 58.5 126 38.9
AUR62004084 Chenopodium quinoa HOM05D002962 ORTHO05D003280 1.0e-06 57.8 105 38.1
arahy.Tifrunner.gnm1.ann1.NSD9NK Arachis hypogaea HOM05D000001 ORTHO05D000003 1.4e-06 57.4 55 58.2
AT5G66480 Arabidopsis thaliana HOM05D002962 ORTHO05D003280 1.8e-06 57.0 143 32.9
CARHR281270 Cardamine hirsuta HOM05D002962 ORTHO05D003280 2.3e-06 56.6 56 51.8
Gohir.A12G063600 Gossypium hirsutum HOM05D002962 ORTHO05D003280 3.0e-06 56.2 83 47.0
VMungo1215G0433 Vigna mungo HOM05D002962 ORTHO05D003280 3.9e-06 55.8 104 39.4
arahy.Tifrunner.gnm1.ann1.25MAD8 Arachis hypogaea HOM05D002962 ORTHO05D003280 8.8e-06 54.7 55 56.4
Gohir.D10G092100 Gossypium hirsutum HOM05D002962 ORTHO05D003280 8.8e-06 54.7 82 41.5


User provided reference genes

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