Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 9.9e-101 370.2 193 100.0
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 1.0e-60 237.3 196 68.4
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.8e-41 173.3 195 53.3
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 2.6e-40 169.5 197 53.3
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.2e-39 166.4 196 52.0
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.8e-39 166.0 196 52.6
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.1e-38 164.1 192 54.7
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.2e-34 150.6 187 49.2
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.8e-33 146.7 194 43.8
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 3.0e-33 146.0 188 47.3
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 3.0e-33 146.0 188 47.3
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 5.2e-33 145.2 189 50.8
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 5.2e-33 145.2 189 47.6
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.7e-31 139.0 189 44.4
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.9e-31 138.7 204 44.1
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 8.3e-31 137.9 188 47.9
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.1e-30 137.5 180 45.0
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 1.8e-30 136.7 184 45.1
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 2.4e-30 136.3 185 47.6
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 3.2e-30 136.0 185 45.4
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 3.2e-30 136.0 191 42.4
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 4.1e-30 135.6 182 45.6
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 7.0e-30 134.8 182 48.9
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 9.2e-30 134.4 186 46.8
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 2.0e-29 133.3 189 45.5
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 4.6e-29 132.1 187 44.4
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 5.9e-29 131.7 190 46.3
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 7.8e-29 131.3 181 47.5
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.0e-28 131.0 185 41.1
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.7e-28 130.2 184 42.4
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.3e-28 129.8 184 47.3
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 3.9e-28 129.0 192 42.7
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 3.9e-28 129.0 184 45.7
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 6.6e-28 128.3 181 44.2
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 6.6e-28 128.3 190 44.7
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 6.6e-28 128.3 184 44.6
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 8.6e-28 127.9 187 44.4
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 8.6e-28 127.9 182 45.1
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.1e-27 127.5 189 42.9
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 1.5e-27 127.1 198 45.5
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 1.9e-27 126.7 190 42.6
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.9e-27 126.7 181 41.4
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.9e-27 126.7 185 42.7
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 2.5e-27 126.3 180 43.9
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 2.5e-27 126.3 178 44.9
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 2.5e-27 126.3 201 43.3
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.5e-27 126.3 183 44.8
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 4.3e-27 125.6 183 45.4
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 5.6e-27 125.2 178 43.3
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 7.3e-27 124.8 189 45.5
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 9.5e-27 124.4 181 47.0
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 9.5e-27 124.4 178 44.4
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 9.5e-27 124.4 161 50.9
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.2e-26 124.0 182 42.9
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.2e-26 124.0 181 43.6
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.2e-26 124.0 187 43.3
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 1.6e-26 123.6 188 44.1
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.1e-26 123.2 192 44.8
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.1e-26 123.2 180 42.2
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 3.6e-26 122.5 185 41.6
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.6e-26 122.5 184 41.3
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 4.7e-26 122.1 192 42.7
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 4.7e-26 122.1 181 44.2
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 6.1e-26 121.7 188 42.0
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 1.0e-25 120.9 183 42.1
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.0e-25 120.9 180 43.3
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.0e-25 120.9 175 44.6
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.4e-25 120.6 188 42.0
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 1.4e-25 120.6 179 43.0
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 2.3e-25 119.8 163 46.6
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 4.0e-25 119.0 178 39.9
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 6.8e-25 118.2 178 43.3
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.2e-24 117.5 178 39.3
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.5e-24 117.1 183 41.0
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.0e-24 116.7 182 43.4
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 2.6e-24 116.3 160 45.6
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 2.6e-24 116.3 190 40.5
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 3.4e-24 115.9 185 41.1
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 4.4e-24 115.5 182 40.7
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 4.4e-24 115.5 186 42.5
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 2.2e-23 113.2 162 45.1
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 2.9e-23 112.8 182 41.8
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 3.7e-23 112.5 193 40.4
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 4.9e-23 112.1 178 42.7
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.4e-23 111.7 184 40.2
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 1.4e-22 110.5 194 39.2
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 3.2e-22 109.4 179 40.8
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 3.2e-22 109.4 159 44.7
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 7.0e-22 108.2 181 41.4
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.2e-21 107.5 191 38.2
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.6e-21 107.1 176 42.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.6e-21 107.1 192 38.5
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.7e-21 106.3 181 40.9
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 6.0e-21 105.1 181 41.4
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 6.0e-21 105.1 181 41.4
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 6.0e-21 105.1 181 40.9
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 6.0e-21 105.1 188 37.2
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 7.8e-21 104.8 185 38.9
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 7.8e-21 104.8 181 41.4
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 7.8e-21 104.8 185 38.9
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 7.8e-21 104.8 181 41.4
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 7.8e-21 104.8 161 42.9
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.0e-20 104.4 183 41.5
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.0e-20 104.4 183 41.5
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.0e-20 104.4 174 41.4
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 1.7e-20 103.6 181 40.9
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 1.7e-20 103.6 181 40.9
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.3e-20 103.2 188 37.2
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 3.9e-20 102.4 181 40.3
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 5.0e-20 102.1 188 36.2
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.6e-20 101.7 188 36.2
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.1e-19 100.9 173 39.9
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 3.3e-19 99.4 155 43.9
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 4.3e-19 99.0 184 38.0
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.2e-18 97.4 159 40.3
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 3.6e-18 95.9 175 38.9
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 1.1e-17 94.4 149 40.3
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.4e-17 94.0 175 36.6
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.4e-17 94.0 151 43.0
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.0e-17 92.4 174 39.7
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 5.2e-17 92.0 175 42.3
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.5e-16 90.5 178 36.5
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 2.0e-16 90.1 174 36.8
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.0e-16 90.1 175 36.6
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 4.4e-16 89.0 184 37.5
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 5.8e-16 88.6 175 35.4
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 5.8e-16 88.6 100 48.0
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 7.5e-16 88.2 175 36.0
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 7.5e-16 88.2 175 37.1
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 7.5e-16 88.2 175 37.1
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 1.3e-15 87.4 175 36.6
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 1.3e-15 87.4 175 36.6
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 6.4e-15 85.1 175 36.0
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 6.4e-15 85.1 185 34.6
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 2.4e-14 83.2 188 33.0
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.2e-14 82.8 175 36.6
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 5.4e-14 82.0 195 31.8
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 1.2e-13 80.9 190 28.9
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 1.6e-13 80.5 79 53.2
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 2.3e-12 76.6 165 33.3
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 3.0e-12 76.3 156 35.9
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.0e-12 76.3 78 55.1
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.5e-11 73.9 157 36.3
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.5e-11 73.9 194 32.0
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.5e-11 73.9 189 32.8
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.1e-10 68.2 140 37.1
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 5.2e-09 65.5 46 69.6
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 6.8e-09 65.1 197 31.0
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.2e-08 64.3 161 36.0
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 1.2e-08 64.3 182 29.1
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 1.5e-08 63.9 80 42.5
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.4e-08 62.8 196 30.6
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.3e-07 60.8 190 28.9
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 3.7e-07 59.3 173 31.8
CDE02G1081 Ceratophyllum demersum HOM05D001624 ORTHO05D001530 1.4e-06 57.4 144 31.9
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.9e-06 57.0 160 30.6
SEGI_19253 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.2e-06 56.2 183 30.6
SEGI_31432 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.2e-06 56.2 183 30.6
SEGI_30051 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 5.4e-06 55.5 184 28.8
SEGI_22868 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 9.2e-06 54.7 156 28.8


User provided reference genes

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