Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 8.2e-235 816.6 395 100.0
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.2e-169 600.1 321 85.4
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 1.2e-166 590.1 322 83.5
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.4e-165 586.6 314 85.4
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.0e-160 570.5 316 82.9
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.8e-157 559.7 393 69.7
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 6.9e-157 557.8 323 78.0
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 6.9e-157 557.8 348 74.4
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 1.2e-156 557.0 385 69.1
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 2.6e-156 555.8 323 78.3
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 1.7e-155 553.1 313 81.5
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 1.7e-155 553.1 312 80.8
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 1.7e-155 553.1 322 78.9
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 3.8e-155 552.0 352 73.0
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 8.4e-155 550.8 314 80.9
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 5.4e-154 548.1 320 79.1
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 9.3e-154 547.4 320 78.4
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.1e-153 546.2 337 76.3
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.1e-153 546.2 337 76.3
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 7.9e-153 544.3 407 66.6
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.8e-152 543.1 314 78.7
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 3.9e-152 542.0 336 75.0
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.1e-151 540.4 318 78.3
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.9e-151 539.7 314 78.3
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 4.3e-151 538.5 312 78.8
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 5.6e-151 538.1 315 78.4
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 7.4e-151 537.7 318 77.7
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 9.6e-151 537.3 320 76.9
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.6e-150 536.6 314 79.6
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 2.8e-150 535.8 341 73.9
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.7e-150 535.4 314 77.4
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 8.1e-150 534.3 359 71.3
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.8e-149 533.1 314 78.0
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.8e-149 533.1 320 78.4
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.4e-149 532.7 314 77.7
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 4.0e-149 531.9 406 65.0
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 6.9e-149 531.2 321 76.0
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 2.0e-148 529.6 314 77.1
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 3.4e-148 528.9 306 80.4
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 3.4e-148 528.9 319 74.3
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 4.5e-148 528.5 315 78.7
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 4.5e-148 528.5 314 76.4
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 7.6e-148 527.7 340 73.5
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 9.9e-148 527.3 311 75.9
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 1.3e-147 526.9 315 77.1
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 2.2e-147 526.2 328 73.8
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.9e-147 525.8 314 76.8
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 3.8e-147 525.4 315 76.8
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 4.9e-147 525.0 311 76.2
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 6.4e-147 524.6 328 73.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 8.4e-147 524.2 330 73.9
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 8.4e-147 524.2 315 77.1
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 8.4e-147 524.2 314 75.5
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 1.1e-146 523.9 315 75.9
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.1e-146 523.9 345 70.7
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 1.1e-146 523.9 313 76.7
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.4e-146 523.5 314 76.1
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.4e-146 523.5 400 65.8
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.4e-146 522.7 407 63.1
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 2.4e-146 522.7 320 76.9
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.2e-146 522.3 314 75.2
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 4.2e-146 521.9 315 75.9
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 4.2e-146 521.9 314 75.5
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 7.1e-146 521.2 306 78.8
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 9.3e-146 520.8 312 75.6
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 9.3e-146 520.8 313 76.4
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 4.6e-145 518.5 311 75.9
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 6.0e-145 518.1 311 75.2
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 6.0e-145 518.1 312 76.3
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 7.9e-145 517.7 327 71.3
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 1.0e-144 517.3 334 72.2
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.0e-144 517.3 401 66.1
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 1.3e-144 516.9 314 74.8
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.3e-144 516.9 306 77.5
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.8e-144 516.5 306 77.1
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 2.3e-144 516.2 314 76.1
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 3.0e-144 515.8 325 73.5
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 6.7e-144 514.6 315 74.3
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 4.3e-143 511.9 323 73.7
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 5.6e-143 511.5 396 64.1
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.6e-142 510.0 314 75.5
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 2.1e-142 509.6 396 62.4
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 3.7e-142 508.8 387 64.3
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 4.8e-142 508.4 314 73.6
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.4e-141 506.9 314 74.8
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.4e-141 506.9 306 74.5
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.8e-141 506.5 314 74.2
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 5.3e-141 505.0 315 73.3
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 5.3e-141 505.0 336 68.2
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 6.9e-141 504.6 313 72.8
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 2.6e-140 502.7 306 74.2
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.8e-140 501.5 311 73.3
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 2.5e-138 496.1 314 75.5
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 5.5e-138 495.0 314 73.2
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 7.1e-138 494.6 325 71.4
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 9.3e-138 494.2 313 72.5
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.7e-137 492.7 324 68.2
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 1.3e-136 490.3 328 69.8
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 6.7e-136 488.0 387 62.5
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.5e-135 486.1 305 72.8
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.2e-134 483.0 313 72.2
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 3.6e-129 465.7 320 69.1
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.0e-128 464.2 321 69.5
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.3e-127 459.1 314 68.8
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 5.3e-125 451.8 310 70.0
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 9.4e-122 441.0 303 66.7
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 1.6e-121 440.3 314 67.5
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 1.8e-120 436.8 303 65.0
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 3.0e-120 436.0 322 59.9
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 3.3e-119 432.6 308 66.2
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 5.7e-119 431.8 411 56.0
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.3e-118 430.6 331 64.0
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.7e-118 430.3 308 62.0
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 5.3e-117 425.2 392 55.1
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.5e-116 423.7 293 63.5
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 6.1e-113 411.8 303 62.7
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.2e-112 408.7 511 45.8
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 5.7e-111 405.2 232 77.2
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.7e-110 403.7 312 59.9
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 5.3e-109 398.7 212 86.3
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.4e-93 347.4 202 78.7
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 9.1e-93 344.7 251 65.3
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 9.1e-93 344.7 214 74.3
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.1e-90 337.8 204 75.0
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 3.8e-83 312.8 186 75.8
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 4.4e-79 299.3 303 48.2
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 7.5e-79 298.5 176 74.4
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 9.8e-79 298.1 246 60.2
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.3e-72 276.9 312 50.3
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 6.2e-49 199.1 208 47.1
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.5e-39 166.4 99 70.7
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-37 161.8 99 76.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 1.3e-35 154.8 87 75.9
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.9e-30 136.3 122 53.3
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.5e-28 130.2 79 70.9
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.5e-26 124.0 79 75.9
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.1e-25 120.9 91 63.7
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.1e-24 118.6 72 70.8
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 4.0e-24 116.7 331 26.9
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 1.7e-22 111.3 315 29.2
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 5.7e-18 96.3 65 73.8
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.9e-13 81.3 159 32.1
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 1.8e-11 74.7 292 24.3
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.3e-10 70.1 54 64.8
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 4.3e-10 70.1 77 41.6
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.5e-07 61.6 48 56.2
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 8.5e-06 55.8 43 67.4


User provided reference genes

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