Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22369 Striga asiatica HOM05D004357 ORTHO05D005064 2.1e-58 229.2 146 100.0
Migut.J01605 Erythranthe guttata HOM05D004357 ORTHO05D005064 6.5e-12 74.7 134 56.0
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 1.6e-10 70.1 70 44.3
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.6e-10 68.9 118 35.6
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 6.1e-10 68.2 118 35.6
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 6.1e-10 68.2 118 35.6
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.0e-09 67.4 99 37.4
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 1.0e-09 67.4 118 35.6
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.0e-09 67.4 118 35.6
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 1.0e-09 67.4 105 40.0
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 1.0e-09 67.4 102 60.8
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 1.4e-09 67.0 90 43.3
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 1.4e-09 67.0 67 47.8
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 1.8e-09 66.6 116 35.3
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 1.8e-09 66.6 108 34.3
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 2.3e-09 66.2 154 48.1
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 2.3e-09 66.2 135 50.4
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 4.0e-09 65.5 108 37.0
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 5.2e-09 65.1 124 34.7
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 5.2e-09 65.1 112 39.3
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 6.7e-09 64.7 118 33.9
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 6.7e-09 64.7 118 34.7
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 8.8e-09 64.3 112 41.1
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 8.8e-09 64.3 109 35.8
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 1.5e-08 63.5 85 38.8
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.5e-08 63.5 115 53.0
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 2.0e-08 63.2 64 43.8
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.6e-08 62.8 78 39.7
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 3.3e-08 62.4 113 35.4
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 3.3e-08 62.4 120 52.5
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 4.4e-08 62.0 73 39.7
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 4.4e-08 62.0 109 34.9
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 5.7e-08 61.6 124 33.9
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 9.7e-08 60.8 78 38.5
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 9.7e-08 60.8 108 35.2
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 9.7e-08 60.8 108 33.3
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 9.7e-08 60.8 155 44.5
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 9.7e-08 60.8 66 42.4
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 1.3e-07 60.5 64 48.4
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 1.3e-07 60.5 70 40.0
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 1.3e-07 60.5 101 36.6
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.7e-07 60.1 100 38.0
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 1.7e-07 60.1 68 41.2
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 1.7e-07 60.1 68 41.2
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 1.7e-07 60.1 88 38.6
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 1.7e-07 60.1 60 43.3
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 1.7e-07 60.1 101 35.6
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 2.2e-07 59.7 112 34.8
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 2.2e-07 59.7 147 48.3
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 2.2e-07 59.7 111 36.0
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.2e-07 59.7 149 47.7
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 2.8e-07 59.3 105 36.2
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 2.8e-07 59.3 67 41.8
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 3.7e-07 58.9 60 46.7
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 4.8e-07 58.5 119 34.5
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 4.8e-07 58.5 126 32.5
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 4.8e-07 58.5 116 32.8
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 6.3e-07 58.2 122 34.4
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 6.3e-07 58.2 67 41.8
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 6.3e-07 58.2 67 41.8
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 8.2e-07 57.8 118 50.8
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 8.2e-07 57.8 60 45.0
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 8.2e-07 57.8 143 49.0
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 8.2e-07 57.8 65 40.0
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 1.1e-06 57.4 82 34.1
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-06 57.4 78 38.5
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 1.1e-06 57.4 78 38.5
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 1.4e-06 57.0 119 33.6
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 1.4e-06 57.0 119 33.6
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 1.4e-06 57.0 66 40.9
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.4e-06 57.0 115 30.4
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 1.8e-06 56.6 78 38.5
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.8e-06 56.6 78 38.5
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.8e-06 56.6 92 35.9
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 2.4e-06 56.2 77 37.7
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 2.4e-06 56.2 64 40.6
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 2.4e-06 56.2 78 37.2
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 2.4e-06 56.2 60 41.7
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 2.4e-06 56.2 63 44.4
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.1e-06 55.8 92 35.9
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 3.1e-06 55.8 92 35.9
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 4.1e-06 55.5 63 44.4
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 4.1e-06 55.5 100 56.0
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 4.1e-06 55.5 103 35.0
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 7.0e-06 54.7 103 31.1
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 7.0e-06 54.7 78 35.9
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 7.0e-06 54.7 123 35.0
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 7.0e-06 54.7 76 39.5
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 7.0e-06 54.7 100 62.0
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 9.1e-06 54.3 106 34.0
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 9.1e-06 54.3 63 44.4
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 9.1e-06 54.3 116 35.3


User provided reference genes

Program Settings