Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 1.1e-70 270.0 149 100.0
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 5.8e-32 141.4 149 61.7
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 2.7e-29 132.5 149 57.0
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 3.6e-26 122.1 154 51.9
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 9.9e-24 114.0 148 51.4
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 4.9e-23 111.7 134 56.0
SGA_v2.0_scaffold104G30067 Striga asiatica HOM05D005060 ORTHO05D005975 4.9e-23 111.7 87 72.4
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 2.4e-22 109.4 124 64.5
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 9.3e-22 107.5 149 51.0
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 2.1e-21 106.3 152 48.7
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 3.5e-21 105.5 152 48.7
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 4.6e-21 105.1 117 58.1
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 6.0e-21 104.8 152 48.0
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 3.0e-20 102.4 150 46.7
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 5.1e-20 101.7 148 50.7
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 7.3e-19 97.8 160 45.6
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 1.3e-18 97.1 149 47.0
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 2.8e-18 95.9 109 55.0
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 8.1e-18 94.4 151 49.0
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 8.1e-18 94.4 152 46.7
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 1.1e-17 94.0 118 53.4
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 1.4e-17 93.6 147 49.0
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 4.0e-17 92.0 159 49.1
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 9.0e-17 90.9 145 44.8
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 1.5e-16 90.1 149 47.7
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 2.0e-16 89.7 149 43.6
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 3.4e-16 89.0 153 49.7
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 5.8e-16 88.2 149 47.7
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 7.6e-16 87.8 109 54.1
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 1.3e-15 87.0 141 44.0
Sopen10g028770 Solanum pennellii HOM05D005060 ORTHO05D005975 1.3e-15 87.0 152 48.0
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 2.2e-15 86.3 157 43.9
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 2.9e-15 85.9 138 44.2
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 1.4e-14 83.6 147 46.9
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 2.4e-14 82.8 136 50.0
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 3.2e-14 82.4 149 45.0
Solyc10g077090.2 Solanum lycopersicum HOM05D005060 ORTHO05D005975 3.2e-14 82.4 152 47.4
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 4.2e-14 82.0 149 47.0
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 7.1e-14 81.3 149 47.0
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 9.3e-14 80.9 122 45.9
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 2.1e-13 79.7 146 45.9
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 2.1e-13 79.7 151 42.4
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 2.1e-13 79.7 150 48.0
Cc06_g22810 Coffea canephora HOM05D005060 ORTHO05D005975 3.5e-13 79.0 143 44.8
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 4.6e-13 78.6 161 42.9
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 6.0e-13 78.2 87 49.4
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 6.0e-13 78.2 153 45.1
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 6.0e-13 78.2 153 45.1
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 7.9e-13 77.8 164 41.5
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 7.9e-13 77.8 151 47.0
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 7.9e-13 77.8 141 45.4
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 1.8e-12 76.6 153 43.1
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 2.3e-12 76.3 150 46.0
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 2.3e-12 76.3 153 43.8
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 3.0e-12 75.9 155 45.8
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 3.0e-12 75.9 146 45.2
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 3.9e-12 75.5 153 45.8
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 8.7e-12 74.3 125 50.4
PGSC0003DMG400007184 Solanum tuberosum HOM05D005060 ORTHO05D005975 8.7e-12 74.3 121 47.1
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 1.5e-11 73.6 149 45.6
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.5e-11 73.6 149 45.6
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 1.5e-11 73.6 144 38.9
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 1.5e-11 73.6 116 50.0
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 1.9e-11 73.2 154 43.5
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 1.9e-11 73.2 138 44.2
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 2.5e-11 72.8 113 50.4
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 3.3e-11 72.4 146 43.8
SalBow6G5728 Salvia bowleyana HOM05D005060 ORTHO05D005975 3.3e-11 72.4 149 42.3
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 4.3e-11 72.0 96 43.8
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 4.3e-11 72.0 128 44.5
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 5.6e-11 71.6 149 40.9
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 7.4e-11 71.2 148 38.5
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 7.4e-11 71.2 149 38.3
Nitab4.5_0001270g0130 Nicotiana tabacum HOM05D005060 ORTHO05D005975 9.6e-11 70.9 120 47.5
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 1.3e-10 70.5 62 67.7
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 1.6e-10 70.1 146 42.5
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 1.6e-10 70.1 62 71.0
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 2.8e-10 69.3 144 45.1
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 3.7e-10 68.9 93 45.2
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 6.2e-10 68.2 130 40.8
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 6.2e-10 68.2 140 45.7
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 8.1e-10 67.8 152 38.2
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 2.4e-09 66.2 152 44.7
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 2.4e-09 66.2 152 44.7
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 2.4e-09 66.2 152 44.7
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 3.1e-09 65.9 162 38.9
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 3.1e-09 65.9 62 67.7
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 5.3e-09 65.1 157 42.0
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 6.9e-09 64.7 99 46.5
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 6.9e-09 64.7 143 42.7
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 6.9e-09 64.7 143 42.7
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.5e-08 63.5 116 44.0
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 1.5e-08 63.5 157 36.9
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 2.6e-08 62.8 144 36.1
Actinidia24546 Actinidia chinensis HOM05D005060 ORTHO05D005975 3.4e-08 62.4 132 42.4
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 5.8e-08 61.6 145 42.1
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 1.7e-07 60.1 43 69.8
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 1.7e-07 60.1 156 42.9
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 1.7e-07 60.1 158 43.0
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 1.7e-07 60.1 156 42.9
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 1.7e-07 60.1 156 42.9
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 1.7e-07 60.1 158 43.0
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.7e-07 60.1 140 42.1
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 2.9e-07 59.3 150 40.7
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 3.8e-07 58.9 150 42.0
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 3.8e-07 58.9 153 40.5
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 6.4e-07 58.2 155 41.9
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 8.4e-07 57.8 166 39.2
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 1.1e-06 57.4 152 42.8
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 1.9e-06 56.6 118 41.5
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 1.9e-06 56.6 151 40.4
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 2.4e-06 56.2 158 43.0
CDE02G1443 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 3.2e-06 55.8 161 39.8
CANSAT78G0005 Cannabis sativa HOM05D005060 ORTHO05D005975 9.3e-06 54.3 158 41.8
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 9.3e-06 54.3 133 34.6
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 9.3e-06 54.3 140 40.7


User provided reference genes

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