Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 2.1e-102 375.9 227 100.0
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.0e-59 234.2 231 68.8
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.8e-48 196.8 237 50.2
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 5.3e-45 185.3 235 48.9
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 5.0e-43 178.7 228 48.2
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 2.0e-39 166.8 237 46.0
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 2.4e-37 159.8 245 45.7
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 7.0e-37 158.3 242 41.3
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.2e-36 157.5 232 47.8
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.0e-35 154.5 228 45.6
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 8.5e-35 151.4 246 43.5
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.5e-34 150.6 239 42.3
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.5e-34 150.6 230 43.9
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.9e-34 150.2 252 42.1
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-34 150.2 237 43.0
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 9.4e-34 147.9 239 41.8
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 6.1e-33 145.2 246 41.9
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.4e-32 144.1 240 41.7
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 1.8e-32 143.7 234 46.6
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 4.0e-32 142.5 240 41.2
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.2e-31 141.0 236 43.2
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.5e-31 140.6 243 44.0
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 2.0e-31 140.2 230 43.0
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 1.3e-30 137.5 232 43.1
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.3e-30 137.5 251 38.6
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 1.7e-30 137.1 230 42.2
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 4.8e-30 135.6 245 40.4
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.8e-29 133.7 230 40.9
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.8e-29 133.7 231 42.0
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 3.1e-29 132.9 237 40.1
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 3.1e-29 132.9 267 36.0
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 5.4e-29 132.1 242 40.5
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 7.0e-29 131.7 246 39.0
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 7.0e-29 131.7 265 40.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.0e-29 131.7 248 39.5
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 9.1e-29 131.3 233 41.2
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.2e-28 131.0 244 41.0
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.7e-28 129.8 241 39.4
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.7e-28 129.8 232 40.5
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.5e-28 129.4 235 39.1
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 7.7e-28 128.3 241 39.4
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.0e-27 127.9 240 39.6
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.3e-27 127.5 254 44.5
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 1.3e-27 127.5 234 39.3
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 2.9e-27 126.3 259 36.3
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.0e-27 125.6 241 38.2
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 5.0e-27 125.6 266 38.0
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.1e-26 124.4 238 40.3
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.5e-26 123.2 266 37.6
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 7.2e-26 121.7 240 36.2
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 9.4e-26 121.3 245 36.7
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.6e-25 120.6 261 36.0
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 2.1e-25 120.2 260 35.4
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 6.1e-25 118.6 249 36.9
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.0e-24 117.9 252 38.9
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.0e-24 117.9 260 35.8
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 1.4e-24 117.5 251 35.5
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.4e-24 117.5 248 37.1
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 2.3e-24 116.7 257 39.3
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.3e-24 116.7 260 36.2
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 3.0e-24 116.3 238 35.7
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.2e-23 114.4 267 34.8
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 2.0e-23 113.6 234 38.9
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.6e-23 113.2 270 35.9
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 4.4e-23 112.5 250 36.8
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.4e-23 112.5 260 34.2
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 5.7e-23 112.1 260 34.6
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 5.7e-23 112.1 259 35.5
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 7.5e-23 111.7 249 34.5
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 9.8e-23 111.3 246 37.4
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.7e-22 110.5 243 37.4
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.7e-22 110.5 243 37.4
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 2.8e-22 109.8 265 35.5
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 3.7e-22 109.4 250 35.6
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 3.7e-22 109.4 243 36.6
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 6.3e-22 108.6 260 35.0
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.1e-21 107.8 243 35.4
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.4e-21 107.5 262 35.9
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.4e-21 106.7 268 35.1
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 3.1e-21 106.3 245 35.9
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 4.1e-21 105.9 244 34.4
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 9.1e-21 104.8 254 36.2
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-20 104.4 248 34.7
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 1.2e-20 104.4 244 38.1
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.6e-20 104.0 244 38.1
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.6e-20 104.0 244 38.1
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 3.5e-20 102.8 236 34.3
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 3.5e-20 102.8 192 39.6
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 5.9e-20 102.1 252 34.1
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 7.7e-20 101.7 204 36.8
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.7e-19 100.5 237 40.5
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.9e-19 99.8 190 37.4
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 2.9e-19 99.8 240 34.6
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 2.9e-19 99.8 227 35.2
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.8e-19 99.4 228 36.4
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 3.8e-19 99.4 260 33.5
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 6.6e-19 98.6 264 30.3
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 8.6e-19 98.2 228 36.0
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.1e-18 97.8 228 36.0
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.5e-18 97.4 250 33.2
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 1.5e-18 97.4 250 33.2
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.9e-18 97.1 220 35.0
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 5.6e-18 95.5 243 31.7
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 7.2e-18 95.1 251 33.5
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.6e-17 94.0 255 33.7
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 2.1e-17 93.6 249 32.5
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 2.1e-17 93.6 249 32.5
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 2.1e-17 93.6 249 32.5
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 8.0e-17 91.7 244 33.6
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.4e-16 90.9 250 32.8
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.3e-16 90.1 258 31.4
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 2.3e-16 90.1 107 52.3
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.3e-16 90.1 233 33.9
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.0e-16 89.7 233 33.9
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 4.0e-16 89.4 284 31.3
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 6.8e-16 88.6 246 32.5
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 6.8e-16 88.6 246 32.5
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 6.8e-16 88.6 106 54.7
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 8.9e-16 88.2 252 36.1
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 8.9e-16 88.2 218 32.6
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-15 87.8 246 31.7
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.7e-15 85.5 233 33.0
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 7.5e-15 85.1 248 31.5
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 9.8e-15 84.7 274 30.7
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.3e-14 84.3 256 31.6
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 2.2e-14 83.6 225 30.2
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.7e-14 82.8 269 30.9
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 6.4e-14 82.0 136 44.9
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.1e-13 81.3 244 35.2
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 1.1e-13 81.3 238 36.6
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.1e-13 81.3 254 31.5
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 4.1e-13 79.3 231 35.1
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 4.1e-13 79.3 254 30.7
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 5.4e-13 79.0 246 31.7
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.6e-12 77.4 131 42.0
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.0e-12 77.0 257 30.0
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.7e-12 76.6 105 46.7
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.7e-12 76.6 229 31.4
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.5e-12 76.3 234 31.6
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 5.9e-12 75.5 138 40.6
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 7.8e-12 75.1 129 41.9
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 7.8e-12 75.1 121 43.0
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 2.3e-11 73.6 118 44.9
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 6.6e-11 72.0 114 41.2
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.1e-10 71.2 113 48.7
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 8.0e-09 65.1 83 45.8
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 1.4e-08 64.3 107 41.1
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 8.9e-08 61.6 190 31.6
SalBow6G1278 Salvia bowleyana HOM05D035523 ORTHO05D004907 1.5e-07 60.8 74 54.1
Zm00001eb405310 Zea mays HOM05D015271 ORTHO05D004907 4.9e-06 55.8 72 45.8
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 6.4e-06 55.5 196 29.6


User provided reference genes

Program Settings