Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22301 Striga asiatica HOM05D000333 ORTHO05D000190 2.3e-119 432.2 208 100.0
unitig_21.g20676 Utricularia gibba HOM05D023726 ORTHO05D000190 4.3e-17 92.4 196 40.3
Oeu060778.1 Olea europaea HOM05D030945 ORTHO05D036968 2.4e-15 86.7 184 36.4
SalBow6G1116 Salvia bowleyana HOM05D023726 ORTHO05D012796 4.0e-15 85.9 233 36.5
Migut.J01617 Erythranthe guttata HOM05D010505 ORTHO05D012796 1.7e-13 80.5 62 64.5
Gohir.A13G110300 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.9e-13 79.7 185 35.7
Lj1g0011862 Lotus japonicus HOM05D000333 ORTHO05D000190 1.9e-12 77.0 216 30.1
SGA_v2.0_scaffold69G23179 Striga asiatica HOM05D000333 ORTHO05D000190 4.2e-12 75.9 202 31.7
Oeu060776.1 Olea europaea HOM05D030945 ORTHO05D014592 6.0e-11 72.0 190 34.7
Gohir.D13G112750 Gossypium hirsutum HOM05D000333 ORTHO05D000190 7.9e-11 71.6 176 34.1
Gorai.013G126700 Gossypium raimondii HOM05D000333 ORTHO05D000190 7.9e-11 71.6 174 33.3
Potri.003G192000 Populus trichocarpa HOM05D000333 ORTHO05D000190 7.9e-11 71.6 142 35.2
TPR.G37148 Trifolium pratense HOM05D000333 ORTHO05D000190 7.9e-11 71.6 104 40.4
Cpa.g.sc48.112 Carica papaya HOM05D000333 ORTHO05D000190 1.3e-10 70.9 195 32.8
Lj3g0006225 Lotus japonicus HOM05D000333 ORTHO05D000190 1.3e-10 70.9 220 32.3
TPR.G37695 Trifolium pratense HOM05D000333 ORTHO05D000190 3.0e-10 69.7 231 32.5
TPR.G11179 Trifolium pratense HOM05D000333 ORTHO05D000190 3.9e-10 69.3 230 31.3
Duzib114G0860 Durio zibethinus HOM05D000333 ORTHO05D000190 8.7e-10 68.2 221 32.1
Hma1.2p1_0233F.1_g098180 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 1.1e-09 67.8 208 32.2
PGR031G1471 Punica granatum HOM05D000333 ORTHO05D000190 1.9e-09 67.0 204 31.9
Potri.018G123800 Populus trichocarpa HOM05D000333 ORTHO05D000190 5.6e-09 65.5 190 30.0
TWI77G0366 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 7.4e-09 65.1 131 37.4
Potri.006G063800 Populus trichocarpa HOM05D000333 ORTHO05D000190 9.6e-09 64.7 189 30.2
Thecc.10G138600 Theobroma cacao HOM05D000333 ORTHO05D000190 1.3e-08 64.3 187 31.0
Oeu029000.1 Olea europaea HOM05D023726 ORTHO05D012796 1.6e-08 63.9 42 64.3
C03p08270 Brassica napus HOM05D000333 ORTHO05D000190 2.8e-08 63.2 110 37.3
Gorai.011G221900 Gossypium raimondii HOM05D000333 ORTHO05D000190 2.8e-08 63.2 208 30.3
Thecc.05G315800 Theobroma cacao HOM05D000333 ORTHO05D000190 2.8e-08 63.2 173 29.5
BcaB01g06121 Brassica carinata HOM05D000333 ORTHO05D000190 3.7e-08 62.8 207 32.9
BolC3t12590H Brassica oleracea HOM05D000333 ORTHO05D000190 3.7e-08 62.8 207 32.9
Lalb_Chr11g0067781 Lupinus albus HOM05D000333 ORTHO05D000190 3.7e-08 62.8 160 30.6
Lalb_Chr18g0048121 Lupinus albus HOM05D000333 ORTHO05D000190 3.7e-08 62.8 190 33.2
Gohir.D10G198201 Gossypium hirsutum HOM05D000333 ORTHO05D000190 4.8e-08 62.4 208 30.3
Gorai.001G036700 Gossypium raimondii HOM05D000333 ORTHO05D000190 4.8e-08 62.4 116 35.3
Prupe.2G048400 Prunus persica HOM05D000333 ORTHO05D000190 4.8e-08 62.4 220 29.1
DCAR_021184 Daucus carota HOM05D000333 ORTHO05D000190 6.2e-08 62.0 227 32.2
Gohir.A07G031200 Gossypium hirsutum HOM05D000333 ORTHO05D000190 6.2e-08 62.0 116 35.3
Migut.J01383 Erythranthe guttata HOM05D000333 ORTHO05D000190 8.1e-08 61.6 188 33.0
Psat5g297840 Pisum sativum HOM05D000333 ORTHO05D000190 8.1e-08 61.6 198 32.3
Cfa010970 Carpinus fangiana HOM05D000333 ORTHO05D000190 1.1e-07 61.2 217 30.4
Ciclev10007077m.g Citrus clementina HOM05D000333 ORTHO05D000190 1.1e-07 61.2 203 31.5
Gorai.010G215100 Gossypium raimondii HOM05D000333 ORTHO05D000190 1.1e-07 61.2 195 29.2
Medtr3g012010 Medicago truncatula HOM05D000333 ORTHO05D000190 1.1e-07 61.2 159 34.0
Oeu015335.1 Olea europaea HOM05D023726 ORTHO05D012796 1.1e-07 61.2 42 66.7
Psat5g202560 Pisum sativum HOM05D000333 ORTHO05D000190 1.1e-07 61.2 113 38.1
Actinidia01691 Actinidia chinensis HOM05D000333 ORTHO05D000190 1.4e-07 60.8 86 43.0
C03p00210 Brassica napus HOM05D000333 ORTHO05D000190 1.4e-07 60.8 207 31.9
Ca_01131_v3 Cicer arietinum L. HOM05D000333 ORTHO05D000190 1.4e-07 60.8 80 41.2
Oeu015334.1 Olea europaea HOM05D023726 ORTHO05D012796 1.4e-07 60.8 62 53.2
Sc19g0007940 Simmondsia chinensis HOM05D039714 ORTHO05D000190 1.4e-07 60.8 239 31.0
Cfa019953 Carpinus fangiana HOM05D000333 ORTHO05D000190 1.8e-07 60.5 185 33.0
Glyma.06G311500 Glycine max HOM05D000333 ORTHO05D000190 1.8e-07 60.5 201 31.3
Gohir.D06G183766 Gossypium hirsutum HOM05D000333 ORTHO05D000190 1.8e-07 60.5 199 29.1
Prupe.2G048100 Prunus persica HOM05D000333 ORTHO05D000190 1.8e-07 60.5 230 27.4
THA.LOC109117277 Tarenaya hassleriana HOM05D000333 ORTHO05D000627 1.8e-07 60.5 54 55.6
FvH4_7g04251 Fragaria vesca HOM05D000333 ORTHO05D000190 2.4e-07 60.1 217 32.3
Manes.08G161500 Manihot esculenta HOM05D000333 ORTHO05D000190 2.4e-07 60.1 109 38.5
VMungo1309G1263 Vigna mungo HOM05D000333 ORTHO05D000190 2.4e-07 60.1 183 32.2
A03p00070 Brassica napus HOM05D000333 ORTHO05D000190 3.1e-07 59.7 207 31.9
BraA03t09396Z Brassica rapa HOM05D000333 ORTHO05D000190 3.1e-07 59.7 207 31.9
Medtr3g009410 Medicago truncatula HOM05D000333 ORTHO05D000190 3.1e-07 59.7 256 27.7
Oeu027046.1 Olea europaea HOM05D000333 ORTHO05D000190 3.1e-07 59.7 209 30.1
Oeu027047.1 Olea europaea HOM05D000333 ORTHO05D000190 3.1e-07 59.7 209 30.1
Peaxi162Scf00332g00312 Petunia axillaris HOM05D000333 ORTHO05D000190 3.1e-07 59.7 210 29.0
MBI09_g07741_MAGBIO Magnolia biondii HOM05D001250 ORTHO05D000627 4.0e-07 59.3 197 32.0
Sed0010873 Sechium edule HOM05D000333 ORTHO05D000190 4.0e-07 59.3 175 32.6
Solyc03g117070.1 Solanum lycopersicum HOM05D000333 ORTHO05D000190 4.0e-07 59.3 180 31.7
BcaB01g06122 Brassica carinata HOM05D000333 ORTHO05D000190 5.3e-07 58.9 122 37.7
DCAR_023331 Daucus carota HOM05D001250 ORTHO05D000627 5.3e-07 58.9 121 40.5
Lj3g0001038 Lotus japonicus HOM05D000333 ORTHO05D000190 5.3e-07 58.9 230 30.4
PGSC0003DMG400014124 Solanum tuberosum HOM05D000333 ORTHO05D000190 5.3e-07 58.9 192 29.7
Aqoxy6G00447 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 6.9e-07 58.5 137 36.5
QL07p002376 Quercus lobata HOM05D000333 ORTHO05D000190 6.9e-07 58.5 202 28.7
Sabra06G0020900 Salix brachista HOM05D000333 ORTHO05D000190 6.9e-07 58.5 88 39.8
FAN06G4863 Fragaria x ananassa HOM05D000333 ORTHO05D000190 9.0e-07 58.2 217 31.8
Sabra18G0105700 Salix brachista HOM05D000333 ORTHO05D000190 9.0e-07 58.2 194 31.4
Duzib106G1870 Durio zibethinus HOM05D000333 ORTHO05D000190 1.2e-06 57.8 228 29.8
Duzib138G1529 Durio zibethinus HOM05D000333 ORTHO05D000190 1.2e-06 57.8 91 36.3
Gohir.A06G173702 Gossypium hirsutum HOM05D000333 ORTHO05D000190 1.2e-06 57.8 190 29.5
Ah.06g183560 Amaranthus hybridus HOM05D000333 ORTHO05D000190 1.5e-06 57.4 97 37.1
COL.COLO4_06932 Corchorus olitorius HOM05D000333 ORTHO05D000190 1.5e-06 57.4 41 61.0
Gohir.A05G120100 Gossypium hirsutum HOM05D000333 ORTHO05D000190 1.5e-06 57.4 214 29.9
Lalb_Chr22g0357931 Lupinus albus HOM05D010505 ORTHO05D000190 1.5e-06 57.4 125 34.4
Lalb_Chr23g0272191 Lupinus albus HOM05D000333 ORTHO05D000190 1.5e-06 57.4 162 30.9
TWI14G0117 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 1.5e-06 57.4 195 30.8
TWI59G0210 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 1.5e-06 57.4 195 29.7
Zm00001eb313650 Zea mays HOM05D000333 ORTHO05D000190 1.5e-06 57.4 44 56.8
Actinidia01521 Actinidia chinensis HOM05D000840 ORTHO05D000670 2.0e-06 57.0 75 44.0
Ah.03g148340 Amaranthus hybridus HOM05D000333 ORTHO05D000190 2.0e-06 57.0 111 36.0
CAN.G407.51 Capsicum annuum HOM05D000333 ORTHO05D000190 2.0e-06 57.0 79 38.0
Duzib248G0406 Durio zibethinus HOM05D001250 ORTHO05D000627 2.0e-06 57.0 196 32.7
Gohir.D07G035000 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.0e-06 57.0 112 34.8
Lj1g0014985 Lotus japonicus HOM05D000333 ORTHO05D000190 2.0e-06 57.0 175 29.7
AL6G10170 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 2.6e-06 56.6 193 31.6
EL10Ac4g08054 Beta vulgaris HOM05D000333 ORTHO05D000190 2.6e-06 56.6 62 43.5
CiPaw.09G051500 Carya illinoinensis HOM05D000333 ORTHO05D000190 2.6e-06 56.6 48 56.2
COL.COLO4_18932 Corchorus olitorius HOM05D000333 ORTHO05D000190 2.6e-06 56.6 191 28.8
Dinv31990 Davidia involucrata HOM05D000840 ORTHO05D000670 2.6e-06 56.6 211 28.9
Gohir.A03G147900 Gossypium hirsutum HOM05D001250 ORTHO05D000627 2.6e-06 56.6 73 47.9
Sopen01g001230 Solanum pennellii HOM05D000333 ORTHO05D000190 2.6e-06 56.6 102 39.2
Sopen03g035980 Solanum pennellii HOM05D000333 ORTHO05D000190 2.6e-06 56.6 182 31.3
SGA_v2.0_scaffold301G47799 Striga asiatica HOM05D000333 ORTHO05D000190 2.6e-06 56.6 89 38.2
Thecc.01G209600 Theobroma cacao HOM05D000333 ORTHO05D000190 2.6e-06 56.6 101 37.6
Thecc.02G225300 Theobroma cacao HOM05D001250 ORTHO05D000627 2.6e-06 56.6 57 54.4
TPR.G1249 Trifolium pratense HOM05D000333 ORTHO05D000190 2.6e-06 56.6 157 29.9
TPR.G8383 Trifolium pratense HOM05D010505 ORTHO05D014594 2.6e-06 56.6 66 47.0
VMungo1080G0248 Vigna mungo HOM05D000333 ORTHO05D000190 2.6e-06 56.6 108 34.3
AL675U10010 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 3.4e-06 56.2 58 44.8
BcaB01g04450 Brassica carinata HOM05D000333 ORTHO05D000190 3.4e-06 56.2 89 34.8
Duzib187G0847 Durio zibethinus HOM05D000333 ORTHO05D000190 3.4e-06 56.2 219 28.3
Lj4g0002742 Lotus japonicus HOM05D000333 ORTHO05D000190 3.4e-06 56.2 138 34.1
Medtr3g011970 Medicago truncatula HOM05D000333 ORTHO05D000190 3.4e-06 56.2 103 37.9
Oeu004188.1 Olea europaea HOM05D000333 ORTHO05D000190 3.4e-06 56.2 38 60.5
Oeu042145.1 Olea europaea HOM05D000333 ORTHO05D000190 3.4e-06 56.2 83 42.2
Aa31LG5G11530 Aethionema arabicum HOM05D000333 ORTHO05D000190 4.5e-06 55.8 76 42.1
MSTRG.22787 Avicennia marina HOM05D000333 ORTHO05D000190 4.5e-06 55.8 222 30.6
BcaNung06252 Brassica carinata HOM05D001250 ORTHO05D000627 4.5e-06 55.8 90 38.9
Peaxi162Scf00753g00021 Petunia axillaris HOM05D001250 ORTHO05D000627 4.5e-06 55.8 58 50.0
Sabra08G0093400 Salix brachista HOM05D001250 ORTHO05D000627 4.5e-06 55.8 187 31.0
AUR62029308 Chenopodium quinoa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 60 43.3
FAN02G4135 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN03G2930 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN04G0902 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN10G0778 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN12G0373 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN16G0921 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN18G3909 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN21G0762 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN21G1166 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN23G1246 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN26G0350 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN27G0299 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
FAN28G2336 Fragaria x ananassa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 220 30.5
Lj9P495T27 Lonicera japonica HOM05D000333 ORTHO05D000190 5.8e-06 55.5 92 34.8
Lj4g0001979 Lotus japonicus HOM05D000333 ORTHO05D000190 5.8e-06 55.5 113 38.1
Lalb_Chr05g0217761 Lupinus albus HOM05D001250 ORTHO05D000627 5.8e-06 55.5 78 42.3
Potri.001G324600 Populus trichocarpa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 202 28.7
Potri.006G169800 Populus trichocarpa HOM05D000333 ORTHO05D000190 5.8e-06 55.5 46 50.0
Potri.008G193400 Populus trichocarpa HOM05D001250 ORTHO05D000627 5.8e-06 55.5 80 38.8
Prupe.1G088000 Prunus persica HOM05D000333 ORTHO05D000190 5.8e-06 55.5 98 33.7
Sed0022974 Sechium edule HOM05D000333 ORTHO05D000190 5.8e-06 55.5 47 46.8
SGA_v2.0_scaffold124G33599 Striga asiatica HOM05D000333 ORTHO05D000190 5.8e-06 55.5 204 29.4
TWI18G0965 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 5.8e-06 55.5 177 31.6
Carub.0006s0947 Capsella rubella HOM05D000333 ORTHO05D000190 7.6e-06 55.1 55 45.5
Ciclev10012428m.g Citrus clementina HOM05D000333 ORTHO05D000190 7.6e-06 55.1 48 54.2
Duzib128G1715 Durio zibethinus HOM05D000333 ORTHO05D000190 7.6e-06 55.1 103 35.9
ECA234G2753 Erigeron canadensis HOM05D001250 ORTHO05D000627 7.6e-06 55.1 173 31.8
Migut.K00249 Erythranthe guttata HOM05D000333 ORTHO05D000190 7.6e-06 55.1 61 44.3
Gohir.D02G171100 Gossypium hirsutum HOM05D001250 ORTHO05D000627 7.6e-06 55.1 144 34.7
Lj5g0015570 Lotus japonicus HOM05D000333 ORTHO05D000190 7.6e-06 55.1 57 47.4
Manes.04G155200 Manihot esculenta HOM05D000333 ORTHO05D000190 7.6e-06 55.1 197 29.9
Psat5g214360 Pisum sativum HOM05D000333 ORTHO05D000190 7.6e-06 55.1 72 40.3
Sabra18G0081000 Salix brachista HOM05D000333 ORTHO05D000190 7.6e-06 55.1 59 42.4
PGSC0003DMG400022777 Solanum tuberosum HOM05D000333 ORTHO05D000190 7.6e-06 55.1 102 38.2
unitig_0.g1107 Utricularia gibba HOM05D000333 ORTHO05D000190 7.6e-06 55.1 80 40.0
HPP92_017344 Vanilla planifolia HOM05D001250 ORTHO05D000627 7.6e-06 55.1 52 50.0
HPP92_017351 Vanilla planifolia HOM05D001250 ORTHO05D000627 7.6e-06 55.1 52 50.0
Actinidia17320 Actinidia chinensis HOM05D000333 ORTHO05D000190 9.9e-06 54.7 105 33.3
AL8G33460 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 9.9e-06 54.7 58 43.1
AT5G57520 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 9.9e-06 54.7 58 43.1
Carub.0008s1802 Capsella rubella HOM05D000333 ORTHO05D000190 9.9e-06 54.7 58 43.1
CARHR266170 Cardamine hirsuta HOM05D008496 ORTHO05D010729 9.9e-06 54.7 45 53.3
Ca_11231_v3 Cicer arietinum L. HOM05D000333 ORTHO05D000190 9.9e-06 54.7 97 38.1
Ca_26574_v3 Cicer arietinum L. HOM05D001250 ORTHO05D000627 9.9e-06 54.7 79 41.8
Duzib177G0266 Durio zibethinus HOM05D000333 ORTHO05D000190 9.9e-06 54.7 188 29.8
Eucgr.B03001 Eucalyptus grandis HOM05D001250 ORTHO05D000627 9.9e-06 54.7 54 48.1
Thhalv10015445m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 9.9e-06 54.7 58 43.1
Gohir.A10G190501 Gossypium hirsutum HOM05D000333 ORTHO05D000190 9.9e-06 54.7 205 29.3
Gohir.D07G213400 Gossypium hirsutum HOM05D001250 ORTHO05D000627 9.9e-06 54.7 51 52.9
Gorai.001G241300 Gossypium raimondii HOM05D001250 ORTHO05D000627 9.9e-06 54.7 51 52.9
Medtr2g067740 Medicago truncatula HOM05D000333 ORTHO05D000190 9.9e-06 54.7 115 34.8
Peaxi162Scf00193g00132 Petunia axillaris HOM05D000333 ORTHO05D000190 9.9e-06 54.7 105 36.2
Phvul.010G141600 Phaseolus vulgaris HOM05D021480 ORTHO05D023073 9.9e-06 54.7 55 45.5
Psat5g224200 Pisum sativum HOM05D000333 ORTHO05D000190 9.9e-06 54.7 45 48.9
Potri.016G028100 Populus trichocarpa HOM05D000333 ORTHO05D000190 9.9e-06 54.7 170 28.8
PGR102G3337 Punica granatum HOM05D001250 ORTHO05D000627 9.9e-06 54.7 69 40.6
Sp6g19220 Schrenkiella parvula HOM05D000333 ORTHO05D000190 9.9e-06 54.7 58 43.1
THA.LOC104817797 Tarenaya hassleriana HOM05D000333 ORTHO05D000190 9.9e-06 54.7 45 48.9
TAR383G0247 Trochodendron aralioides HOM05D000333 ORTHO05D000190 9.9e-06 54.7 58 44.8
unitig_899.g15076 Utricularia gibba HOM05D003047 ORTHO05D000627 9.9e-06 54.7 87 37.9


User provided reference genes

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