Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22299 Striga asiatica HOM05D000223 ORTHO05D016846 4.7e-67 257.7 125 100.0
MSTRG.19778 Avicennia marina HOM05D000088 ORTHO05D008670 1.1e-20 103.6 88 60.2
Migut.J01618 Erythranthe guttata HOM05D000223 ORTHO05D008670 1.1e-18 97.1 88 55.7
SGA_v2.0_scaffold69G23178 Striga asiatica HOM05D000223 ORTHO05D008670 1.4e-18 96.7 88 59.1
Cpa.g.sc37.35 Carica papaya HOM05D000223 ORTHO05D008670 3.1e-18 95.5 88 55.7
EL10Ac3g07290 Beta vulgaris HOM05D000223 ORTHO05D008670 8.9e-18 94.0 88 53.4
Ah.04g150620 Amaranthus hybridus HOM05D000223 ORTHO05D008670 3.4e-17 92.0 87 54.0
Eucgr.K01673 Eucalyptus grandis HOM05D000223 ORTHO05D008670 4.4e-17 91.7 88 54.5
FAN15G2663 Fragaria x ananassa HOM05D000223 ORTHO05D008670 4.4e-17 91.7 88 52.3
Eucgr.L02445 Eucalyptus grandis HOM05D000223 ORTHO05D008670 1.3e-16 90.1 88 53.4
PSO384G3882 Papaver somniferum HOM05D000223 ORTHO05D008670 1.3e-16 90.1 88 51.1
RcHm_v2.0_Chr6g0284731 Rosa chinensis HOM05D000223 ORTHO05D008670 1.3e-16 90.1 88 53.4
AUR62021044 Chenopodium quinoa HOM05D000223 ORTHO05D008670 2.2e-16 89.4 88 51.1
Cc06_g20510 Coffea canephora HOM05D000494 ORTHO05D008670 2.2e-16 89.4 88 51.1
AUR62018399 Chenopodium quinoa HOM05D000223 ORTHO05D008670 2.9e-16 89.0 88 51.1
FvH4_2g18940 Fragaria vesca HOM05D000223 ORTHO05D008670 2.9e-16 89.0 88 51.1
FAN24G3139 Fragaria x ananassa HOM05D000223 ORTHO05D008670 2.9e-16 89.0 88 51.1
Nn7g36998 Nelumbo nucifera HOM05D000223 ORTHO05D008670 2.9e-16 89.0 88 51.1
PGR142G0562 Punica granatum HOM05D000223 ORTHO05D008670 2.9e-16 89.0 88 52.3
Hund19071 Selenicereus undatus HOM05D000223 ORTHO05D008670 2.9e-16 89.0 88 48.9
TAR633G0654 Trochodendron aralioides HOM05D000223 ORTHO05D008670 2.9e-16 89.0 107 46.7
Manes.08G063732 Manihot esculenta HOM05D000223 ORTHO05D008670 3.7e-16 88.6 88 51.1
MELO3C009743.2 Cucumis melo HOM05D000223 ORTHO05D008670 4.9e-16 88.2 88 52.3
Dinv00874 Davidia involucrata HOM05D000223 ORTHO05D016846 6.4e-16 87.8 88 52.3
Dinv30090 Davidia involucrata HOM05D000223 ORTHO05D008670 6.4e-16 87.8 88 52.3
Hma1.2p1_0031F.1_g018410 Hydrangea macrophylla HOM05D000223 ORTHO05D008670 6.4e-16 87.8 88 53.4
MD12G1099600 Malus domestica HOM05D000223 ORTHO05D008670 8.3e-16 87.4 88 52.3
Sc25g0005540 Simmondsia chinensis HOM05D000223 ORTHO05D008670 8.3e-16 87.4 87 52.9
Aqoxy1G00057 Aquilegia oxysepala HOM05D000223 ORTHO05D008670 1.1e-15 87.0 88 51.1
Sed0010522 Sechium edule HOM05D000223 ORTHO05D008670 1.1e-15 87.0 88 52.3
vmacro07765 Vaccinium macrocarpon HOM05D000088 ORTHO05D008670 1.1e-15 87.0 88 52.3
Gohir.D13G000200 Gossypium hirsutum HOM05D000223 ORTHO05D008670 1.9e-15 86.3 88 50.0
Gorai.013G001000 Gossypium raimondii HOM05D000223 ORTHO05D008670 1.9e-15 86.3 88 50.0
CSS0040284 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D008670 3.2e-15 85.5 88 51.1
CsaV3_3G040010 Cucumis sativus L. HOM05D000223 ORTHO05D008670 3.2e-15 85.5 88 50.0
Lj5g0002002 Lotus japonicus HOM05D000223 ORTHO05D008670 3.2e-15 85.5 88 50.0
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 3.2e-15 85.5 88 50.0
RhsimUnG0209300 Rhododendron simsii HOM05D000494 ORTHO05D008670 3.2e-15 85.5 88 51.1
Solyc01g056690.4 Solanum lycopersicum HOM05D000223 ORTHO05D008670 3.2e-15 85.5 88 51.1
Sopen01g020840 Solanum pennellii HOM05D000223 ORTHO05D008670 3.2e-15 85.5 88 51.1
Ciclev10011248m.g Citrus clementina HOM05D000223 ORTHO05D008670 4.1e-15 85.1 88 50.0
MBI10_g42733_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D008670 4.1e-15 85.1 88 51.1
Thecc.05G122400 Theobroma cacao HOM05D000223 ORTHO05D008670 4.1e-15 85.1 88 52.3
COL.COLO4_19401 Corchorus olitorius HOM05D000223 ORTHO05D008670 5.4e-15 84.7 88 50.0
Potri.016G030800 Populus trichocarpa HOM05D000223 ORTHO05D008670 7.0e-15 84.3 88 50.0
THA.LOC104814580 Tarenaya hassleriana HOM05D000223 ORTHO05D008670 7.0e-15 84.3 88 47.7
Atru.chr1.1351 Acer truncatum HOM05D000223 ORTHO05D008670 1.2e-14 83.6 88 50.0
CANSAT35G0549 Cannabis sativa HOM05D000223 ORTHO05D008670 1.2e-14 83.6 88 50.0
Duzib128G1945 Durio zibethinus HOM05D000223 ORTHO05D008670 1.2e-14 83.6 88 48.9
Gohir.A13G001700 Gossypium hirsutum HOM05D000223 ORTHO05D008670 1.2e-14 83.6 88 48.9
Lalb_Chr21g0316801 Lupinus albus HOM05D000223 ORTHO05D008670 1.2e-14 83.6 88 51.1
QL07p013384 Quercus lobata HOM05D000223 ORTHO05D008670 1.2e-14 83.6 88 50.0
Glyma.02G162300 Glycine max HOM05D000223 ORTHO05D008670 1.6e-14 83.2 88 48.9
Hma1.2p1_0031F.1_g018420 Hydrangea macrophylla HOM05D000223 ORTHO05D016846 1.6e-14 83.2 83 53.0
Peaxi162Scf00470g00048 Petunia axillaris HOM05D000223 ORTHO05D008670 1.6e-14 83.2 88 50.0
Actinidia17970 Actinidia chinensis HOM05D000494 ORTHO05D008670 2.1e-14 82.8 107 44.9
VMungo0720G1770 Vigna mungo HOM05D000223 ORTHO05D008670 2.1e-14 82.8 88 48.9
A03p23000 Brassica napus HOM05D000223 ORTHO05D008670 2.7e-14 82.4 88 47.7
BraA03t11523Z Brassica rapa HOM05D000223 ORTHO05D008670 2.7e-14 82.4 88 47.7
Sabra16G0034100 Salix brachista HOM05D000494 ORTHO05D008670 2.7e-14 82.4 88 47.7
TWI53G0492 Tripterygium wilfordii HOM05D000223 ORTHO05D008670 2.7e-14 82.4 88 53.4
ClCG10G016330 Citrullus lanatus HOM05D000223 ORTHO05D008670 1.0e-13 80.5 106 41.5
Thhalv10016363m.g Eutrema salsugineum HOM05D000223 ORTHO05D008670 1.0e-13 80.5 88 47.7
Nitab4.5_0002068g0040 Nicotiana tabacum HOM05D000223 ORTHO05D008670 1.0e-13 80.5 88 48.9
Aa31LG3G1240 Aethionema arabicum HOM05D000223 ORTHO05D008670 1.3e-13 80.1 87 46.0
BolC3t15109H Brassica oleracea HOM05D000223 ORTHO05D008670 1.3e-13 80.1 88 47.7
CiPaw.10G043700 Carya illinoinensis HOM05D000223 ORTHO05D008670 1.3e-13 80.1 87 49.4
ECA247G3244 Erigeron canadensis HOM05D000223 ORTHO05D008670 1.3e-13 80.1 86 53.5
BcaC01g05371 Brassica carinata HOM05D000223 ORTHO05D008670 1.7e-13 79.7 88 46.6
BcaNung05542 Brassica carinata HOM05D000088 ORTHO05D008670 1.7e-13 79.7 88 46.6
CARHR135980 Cardamine hirsuta HOM05D000223 ORTHO05D008670 1.7e-13 79.7 88 46.6
ATR0724G099 Amborella trichopoda HOM05D000223 ORTHO05D008670 2.3e-13 79.3 88 48.9
BcaB01g03508 Brassica carinata HOM05D000223 ORTHO05D008670 2.3e-13 79.3 88 46.6
Sp4g23190 Schrenkiella parvula HOM05D000223 ORTHO05D008670 2.3e-13 79.3 88 46.6
GSVIVG01025802001 Vitis vinifera HOM05D000223 ORTHO05D008670 3.0e-13 79.0 88 48.9
Carub.0004s2318 Capsella rubella HOM05D000223 ORTHO05D008670 5.1e-13 78.2 86 47.7
RhsimUnG0018900 Rhododendron simsii HOM05D000494 ORTHO05D008670 5.1e-13 78.2 81 49.4
CAN.G197.1 Capsicum annuum HOM05D000223 ORTHO05D008670 6.6e-13 77.8 88 46.6
AL4G38810 Arabidopsis lyrata HOM05D000223 ORTHO05D008670 8.6e-13 77.4 88 45.5
HanXRQChr10g0298501 Helianthus annuus HOM05D000223 ORTHO05D008670 8.6e-13 77.4 88 48.9
Nitab4.5_0001513g0020 Nicotiana tabacum HOM05D000223 ORTHO05D016846 1.1e-12 77.0 85 48.2
TPR.G16472 Trifolium pratense HOM05D000223 ORTHO05D008670 2.5e-12 75.9 88 46.6
Nitab4.5_0001958g0020 Nicotiana tabacum HOM05D000223 ORTHO05D016846 5.6e-12 74.7 85 47.1
Ca_05362_v3 Cicer arietinum L. HOM05D000223 ORTHO05D008670 7.3e-12 74.3 88 45.5
Medtr1g050520 Medicago truncatula HOM05D000223 ORTHO05D008670 1.2e-11 73.6 88 47.7
DCAR_020602 Daucus carota HOM05D000223 ORTHO05D008670 2.1e-11 72.8 87 46.0
CDE02G3287 Ceratophyllum demersum HOM05D000223 ORTHO05D008670 2.8e-11 72.4 86 45.3
arahy.Tifrunner.gnm1.ann1.5JYC56 Arachis hypogaea HOM05D000223 ORTHO05D008670 5.2e-10 68.2 93 40.9
arahy.Tifrunner.gnm1.ann1.DZ1TRF Arachis hypogaea HOM05D000223 ORTHO05D008670 5.2e-10 68.2 93 40.9
Os01g0541900 Oryza sativa ssp. japonica HOM05D000223 ORTHO05D008670 6.8e-10 67.8 84 44.0
SalBow6G2441 Salvia bowleyana HOM05D000088 ORTHO05D008670 8.9e-10 67.4 43 76.7
C03p27270 Brassica napus HOM05D000223 ORTHO05D008670 6.4e-08 61.2 88 40.9
Lj1C1082G8 Lonicera japonica HOM05D000223 ORTHO05D008670 6.4e-08 61.2 42 69.0
Pp3c4_23550 Physcomitrium patens HOM05D000223 ORTHO05D008670 5.4e-07 58.2 85 41.2
Lsat_1_v5_gn_9_32241 Lactuca sativa HOM05D000223 ORTHO05D008670 1.2e-06 57.0 76 43.4
SMO115G0162 Selaginella moellendorffii HOM05D000223 ORTHO05D008670 1.6e-06 56.6 80 42.5


User provided reference genes

Program Settings