Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22297 Striga asiatica HOM05D003182 ORTHO05D404472 2.3e-60 235.3 114 100.0
SGA_v2.0_scaffold135G34859 Striga asiatica HOM05D003182 ORTHO05D003829 5.1e-12 74.7 47 72.3
Migut.H00124 Erythranthe guttata HOM05D003182 ORTHO05D003829 1.5e-11 73.2 51 72.5
SGA_v2.0_scaffold205G41704 Striga asiatica HOM05D003182 ORTHO05D003829 2.5e-11 72.4 47 72.3
MSTRG.24015 Avicennia marina HOM05D003182 ORTHO05D003829 9.6e-11 70.5 51 68.6
Actinidia35739 Actinidia chinensis HOM05D003182 ORTHO05D003829 1.6e-10 69.7 47 66.0
DCAR_011207 Daucus carota HOM05D003182 ORTHO05D003829 1.6e-10 69.7 41 75.6
Oeu018700.3 Olea europaea HOM05D003182 ORTHO05D003829 2.1e-10 69.3 50 70.0
Prupe.3G283700 Prunus persica HOM05D003182 ORTHO05D003829 2.8e-10 68.9 47 63.8
Thecc.04G008600 Theobroma cacao HOM05D003182 ORTHO05D003829 2.8e-10 68.9 47 68.1
TWI56G0688 Tripterygium wilfordii HOM05D003182 ORTHO05D003829 2.8e-10 68.9 47 68.1
Cc07_g02310 Coffea canephora HOM05D003182 ORTHO05D003829 3.6e-10 68.6 51 66.7
Gohir.D11G071300 Gossypium hirsutum HOM05D003182 ORTHO05D003829 3.6e-10 68.6 47 66.0
Gorai.007G076600 Gossypium raimondii HOM05D003182 ORTHO05D003829 3.6e-10 68.6 47 66.0
Nitab4.5_0003337g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 3.6e-10 68.6 51 66.7
Nitab4.5_0005176g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 3.6e-10 68.6 51 66.7
Duzib147G1033 Durio zibethinus HOM05D003182 ORTHO05D003829 4.8e-10 68.2 51 68.6
Gohir.A11G067400 Gossypium hirsutum HOM05D003182 ORTHO05D003829 4.8e-10 68.2 47 66.0
Dinv35057 Davidia involucrata HOM05D003182 ORTHO05D003829 8.1e-10 67.4 51 64.7
Manes.15G182900 Manihot esculenta HOM05D003182 ORTHO05D003829 8.1e-10 67.4 47 63.8
Peaxi162Scf00129g01034 Petunia axillaris HOM05D003182 ORTHO05D003829 8.1e-10 67.4 51 64.7
THA.LOC104805399 Tarenaya hassleriana HOM05D003182 ORTHO05D003829 8.1e-10 67.4 40 77.5
GSVIVG01032486001 Vitis vinifera HOM05D003182 ORTHO05D003829 8.1e-10 67.4 47 61.7
COL.COLO4_28945 Corchorus olitorius HOM05D003182 ORTHO05D003829 1.1e-09 67.0 47 63.8
FvH4_6g50610 Fragaria vesca HOM05D003182 ORTHO05D003829 1.1e-09 67.0 47 59.6
FAN02G2729 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.1e-09 67.0 47 59.6
FAN05G3372 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.1e-09 67.0 47 59.6
FAN09G2145 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.1e-09 67.0 47 59.6
FAN14G0389 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.1e-09 67.0 47 59.6
FAN14G5751 Fragaria x ananassa HOM05D003182 ORTHO05D003829 1.1e-09 67.0 47 59.6
VMungo0464G0504 Vigna mungo HOM05D003182 ORTHO05D003829 1.1e-09 67.0 49 59.2
Haze_14666 Corylus avellana HOM05D003182 ORTHO05D003829 1.4e-09 66.6 51 62.7
Phvul.004G016800 Phaseolus vulgaris HOM05D003182 ORTHO05D003829 1.4e-09 66.6 49 59.2
Sabra09G0114000 Salix brachista HOM05D003182 ORTHO05D003829 1.4e-09 66.6 51 58.8
Sabra09G0116500 Salix brachista HOM05D003182 ORTHO05D003829 1.4e-09 66.6 51 58.8
arahy.Tifrunner.gnm1.ann1.5NVD8S Arachis hypogaea HOM05D003182 ORTHO05D003829 1.8e-09 66.2 51 62.7
Potri.009G147800 Populus trichocarpa HOM05D003182 ORTHO05D003829 1.8e-09 66.2 47 61.7
CAN.G206.33 Capsicum annuum HOM05D003182 ORTHO05D003829 2.4e-09 65.9 51 62.7
RcHm_v2.0_Chr2g0171401 Rosa chinensis HOM05D003182 ORTHO05D003829 2.4e-09 65.9 47 57.4
Solyc02g086900.4 Solanum lycopersicum HOM05D003182 ORTHO05D003829 2.4e-09 65.9 51 62.7
Sopen02g031670 Solanum pennellii HOM05D003182 ORTHO05D003829 2.4e-09 65.9 51 62.7
PGSC0003DMG402000497 Solanum tuberosum HOM05D003182 ORTHO05D003829 2.4e-09 65.9 51 62.7
Lalb_Chr02g0160081 Lupinus albus HOM05D003182 ORTHO05D003829 3.1e-09 65.5 43 67.4
Lalb_Chr02g0160261 Lupinus albus HOM05D003182 ORTHO05D003829 3.1e-09 65.5 43 67.4
THA.LOC104825287 Tarenaya hassleriana HOM05D003182 ORTHO05D003829 3.1e-09 65.5 40 75.0
arahy.Tifrunner.gnm1.ann1.L7KCN6 Arachis hypogaea HOM05D003182 ORTHO05D003829 5.3e-09 64.7 51 62.7
MELO3C009954.2 Cucumis melo HOM05D003182 ORTHO05D003829 5.3e-09 64.7 47 61.7
vmacro18240 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 5.3e-09 64.7 41 68.3
Lj2g0017775 Lotus japonicus HOM05D003182 ORTHO05D003829 6.9e-09 64.3 41 65.9
MD09G1034800 Malus domestica HOM05D003182 ORTHO05D003829 6.9e-09 64.3 47 59.6
PGR083G0239 Punica granatum HOM05D003182 ORTHO05D003829 6.9e-09 64.3 44 63.6
Rhsim08G0055300 Rhododendron simsii HOM05D003182 ORTHO05D003829 6.9e-09 64.3 40 70.0
CiPaw.03G037600 Carya illinoinensis HOM05D003182 ORTHO05D003829 9.0e-09 63.9 51 60.8
CsaV3_3G042400 Cucumis sativus L. HOM05D003182 ORTHO05D003829 9.0e-09 63.9 47 61.7
MBI16_g36058_MAGBIO Magnolia biondii HOM05D003182 ORTHO05D003829 1.2e-08 63.5 47 57.4
Medtr6g007210 Medicago truncatula HOM05D003182 ORTHO05D003829 1.2e-08 63.5 43 65.1
TAR622G1170 Trochodendron aralioides HOM05D003182 ORTHO05D003829 1.2e-08 63.5 51 58.8
EL10Ac4g08569 Beta vulgaris HOM05D003182 ORTHO05D003829 1.5e-08 63.2 41 68.3
Glyma.13G169200 Glycine max HOM05D003182 ORTHO05D003829 1.5e-08 63.2 47 59.6
TAR374G1615 Trochodendron aralioides HOM05D003182 ORTHO05D003829 1.5e-08 63.2 47 57.4
CSS0022412 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 2.6e-08 62.4 47 55.3
Eucgr.J02205 Eucalyptus grandis HOM05D003182 ORTHO05D003829 2.6e-08 62.4 51 60.8
Os01g0109300 Oryza sativa ssp. japonica HOM05D003182 ORTHO05D003829 3.4e-08 62.0 61 50.8
Sc16g0005420 Simmondsia chinensis HOM05D003182 ORTHO05D003829 3.4e-08 62.0 47 59.6
ATR0730G138 Amborella trichopoda HOM05D003182 ORTHO05D003829 5.8e-08 61.2 83 45.8
Glyma.19G009400 Glycine max HOM05D003182 ORTHO05D003829 5.8e-08 61.2 47 57.4
QL02p076707 Quercus lobata HOM05D003182 ORTHO05D003829 7.6e-08 60.8 51 60.8
Zm00001eb219640 Zea mays HOM05D003182 ORTHO05D037811 7.6e-08 60.8 47 59.6
Zm00001eb219650 Zea mays HOM05D003182 ORTHO05D037811 7.6e-08 60.8 47 59.6
Zm00001eb334290 Zea mays HOM05D003182 ORTHO05D003829 7.6e-08 60.8 47 59.6
Hma1.2p1_0867F.1_g230210 Hydrangea macrophylla HOM05D003182 ORTHO05D003829 9.9e-08 60.5 40 67.5
Sed0022900 Sechium edule HOM05D003182 ORTHO05D003829 9.9e-08 60.5 40 62.5
Hund25344 Selenicereus undatus HOM05D003182 ORTHO05D003829 9.9e-08 60.5 51 60.8
TAR371G0642 Trochodendron aralioides HOM05D003182 ORTHO05D037811 9.9e-08 60.5 45 53.3
Zm00001eb126510 Zea mays HOM05D003182 ORTHO05D003829 9.9e-08 60.5 47 57.4
Aa31LG9G1350 Aethionema arabicum HOM05D003182 ORTHO05D003829 1.3e-07 60.1 41 61.0
Ciclev10017499m.g Citrus clementina HOM05D003182 ORTHO05D003829 1.3e-07 60.1 81 44.4
Oeu043063.1 Olea europaea HOM05D003182 ORTHO05D003829 1.3e-07 60.1 51 56.9
ClCG10G014240 Citrullus lanatus HOM05D003182 ORTHO05D003829 1.7e-07 59.7 51 54.9
Cc11_g14640 Coffea canephora HOM05D003182 ORTHO05D003829 1.7e-07 59.7 40 67.5
TAR629G0383 Trochodendron aralioides HOM05D001598 ORTHO05D002757 1.7e-07 59.7 41 58.5
Carub.0007s3536 Capsella rubella HOM05D003182 ORTHO05D003829 2.2e-07 59.3 41 61.0
ECA233G4670 Erigeron canadensis HOM05D003182 ORTHO05D003829 2.2e-07 59.3 51 56.9
Lj3C1051T18 Lonicera japonica HOM05D003182 ORTHO05D003829 2.9e-07 58.9 47 55.3
Oeu003450.3 Olea europaea HOM05D003182 ORTHO05D003829 2.9e-07 58.9 40 65.0
TAR623G1545 Trochodendron aralioides HOM05D000001 ORTHO05D011287 2.9e-07 58.9 47 48.9
Cpa.g.sc39.93 Carica papaya HOM05D003182 ORTHO05D003829 3.8e-07 58.5 39 64.1
TPR.G2315 Trifolium pratense HOM05D003182 ORTHO05D003829 3.8e-07 58.5 41 63.4
BcaB06g27467 Brassica carinata HOM05D003182 ORTHO05D003829 4.9e-07 58.2 43 55.8
Ah.04g163460 Amaranthus hybridus HOM05D003182 ORTHO05D003829 6.4e-07 57.8 51 51.0
AT5G40270 Arabidopsis thaliana HOM05D003182 ORTHO05D003829 6.4e-07 57.8 41 58.5
AUR62005374 Chenopodium quinoa HOM05D003182 ORTHO05D003829 6.4e-07 57.8 41 63.4
Dinv15303 Davidia involucrata HOM05D003182 ORTHO05D003829 6.4e-07 57.8 42 61.9
Sp7g01670 Schrenkiella parvula HOM05D003182 ORTHO05D003829 6.4e-07 57.8 41 58.5
vmacro01182 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 6.4e-07 57.8 39 71.8
Actinidia01705 Actinidia chinensis HOM05D003182 ORTHO05D003829 8.4e-07 57.4 41 65.9
Actinidia27785 Actinidia chinensis HOM05D003182 ORTHO05D003829 8.4e-07 57.4 41 65.9
CSS0021280 Camellia sinensis var. sinensis HOM05D003182 ORTHO05D003829 8.4e-07 57.4 51 60.8
AUR62014036 Chenopodium quinoa HOM05D003182 ORTHO05D003829 8.4e-07 57.4 51 56.9
SGA_v2.0_scaffold165G38249 Striga asiatica HOM05D003182 ORTHO05D003829 1.1e-06 57.0 47 51.1
Actinidia08167 Actinidia chinensis HOM05D003182 ORTHO05D003829 1.4e-06 56.6 41 65.9
AL7G49710 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 1.4e-06 56.6 41 58.5
AT5G40290 Arabidopsis thaliana HOM05D003182 ORTHO05D003829 1.4e-06 56.6 41 58.5
A04p13190 Brassica napus HOM05D003182 ORTHO05D003829 1.4e-06 56.6 41 56.1
C04p46940 Brassica napus HOM05D003182 ORTHO05D003829 1.4e-06 56.6 41 56.1
BolC4t26288H Brassica oleracea HOM05D003182 ORTHO05D003829 1.4e-06 56.6 41 56.1
BraA04t16978Z Brassica rapa HOM05D003182 ORTHO05D003829 1.4e-06 56.6 41 56.1
CARHR261820 Cardamine hirsuta HOM05D003182 ORTHO05D003829 1.4e-06 56.6 51 52.9
Nn3g16899 Nelumbo nucifera HOM05D003182 ORTHO05D003829 1.4e-06 56.6 45 55.6
SalBow2G3598 Salvia bowleyana HOM05D003182 ORTHO05D003829 1.4e-06 56.6 47 51.1
SEGI_37434 Sequoiadendron giganteum HOM05D003182 ORTHO05D003829 1.4e-06 56.6 45 57.8
Pp3c17_2920 Physcomitrium patens HOM05D003182 ORTHO05D003829 1.9e-06 56.2 65 43.1
Migut.L01410 Erythranthe guttata HOM05D003182 ORTHO05D003829 3.2e-06 55.5 47 51.1
GSVIVG01020236001 Vitis vinifera HOM05D003182 ORTHO05D003829 3.2e-06 55.5 51 51.0
Nitab4.5_0000113g0300 Nicotiana tabacum HOM05D003182 ORTHO05D003829 4.2e-06 55.1 40 60.0
Peaxi162Scf00338g00024 Petunia axillaris HOM05D003182 ORTHO05D003829 4.2e-06 55.1 44 54.5
Rhsim12G0047300 Rhododendron simsii HOM05D003182 ORTHO05D003829 4.2e-06 55.1 39 66.7
RhsimUnG0091000 Rhododendron simsii HOM05D003182 ORTHO05D003829 4.2e-06 55.1 39 66.7
HanXRQChr12g0368591 Helianthus annuus HOM05D003182 ORTHO05D003829 5.5e-06 54.7 39 64.1
Nitab4.5_0018380g0010 Nicotiana tabacum HOM05D003182 ORTHO05D003829 5.5e-06 54.7 40 60.0
PGSC0003DMG400030991 Solanum tuberosum HOM05D003182 ORTHO05D003829 5.5e-06 54.7 40 62.5
AL7G49680 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 7.1e-06 54.3 40 57.5
Lsat_1_v5_gn_8_157280 Lactuca sativa HOM05D003182 ORTHO05D003829 7.1e-06 54.3 39 64.1


User provided reference genes

Program Settings