Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 2600.5 1309 100.0
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1808.5 1096 86.1
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1600.1 1194 70.1
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1499.2 1197 65.6
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1443.3 1188 62.1
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1434.5 1221 61.4
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1387.5 1198 60.6
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1384.4 1190 60.7
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1381.7 1188 60.9
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1369.8 1186 60.8
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1365.5 1186 60.2
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1356.7 1236 60.8
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1352.8 1188 59.3
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1348.2 1191 59.1
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1323.5 1199 57.3
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1320.4 1197 58.4
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1319.3 1197 58.5
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1317.8 1181 59.2
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1313.5 1186 58.7
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1310.8 1186 58.7
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1297.7 1184 57.1
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1292.3 1253 55.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1289.2 1232 56.8
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1274.6 1188 57.2
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1273.5 1186 56.2
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1270.0 1185 57.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1269.2 1218 55.3
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1268.8 1178 57.8
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1193 57.0
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1262.3 1171 57.2
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1260.4 1194 56.8
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1259.6 1194 55.1
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1258.4 1160 57.9
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1257.7 1188 57.1
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1242.3 1187 55.9
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1242.3 1178 56.5
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1239.6 1181 55.2
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1238.0 1195 54.5
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1236.9 1171 55.0
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1233.0 1245 54.3
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1229.5 1183 56.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1227.6 1183 56.1
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1227.6 1184 56.4
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1226.1 1189 56.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1225.7 1186 54.3
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1223.0 1187 55.5
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1223.0 1182 54.7
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1219.5 1184 56.0
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1219.1 1183 54.9
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1214.9 1182 54.4
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1213.4 1188 54.9
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1213.0 1146 57.1
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1211.1 1186 54.6
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1210.3 1184 54.7
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1203.3 1183 54.4
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1202.2 1186 54.0
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1201.8 1184 55.0
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1200.7 1180 54.6
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1198.0 1025 59.9
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1195.3 1168 53.9
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1194.1 1189 54.5
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1192.6 1195 53.8
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1191.4 999 61.8
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1191.4 1193 54.1
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1190.6 1189 54.2
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1188.3 1189 54.2
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1187.6 1214 51.8
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1187.2 1214 51.7
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1184.1 1026 59.0
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1182.5 1179 54.4
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1169.8 1189 53.7
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1168.7 1268 52.3
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1166.0 1097 57.2
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1162.1 1180 53.6
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1157.5 1251 51.2
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1153.3 1244 51.8
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1149.4 1203 52.5
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1148.3 1071 57.0
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1137.5 950 61.5
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1135.2 1161 52.7
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1134.4 1161 52.7
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1124.4 1195 51.6
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1124.4 1195 51.6
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1121.7 1161 52.3
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1119.8 1201 51.6
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1116.3 1195 51.6
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1115.5 1027 55.5
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1114.8 1197 51.6
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1111.7 1186 51.5
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1103.6 1023 57.7
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1096.6 1185 50.5
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1095.9 1178 51.2
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1092.8 1174 51.7
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1091.3 1173 51.2
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1087.0 1184 50.8
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1087.0 1190 50.8
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1086.6 1186 50.8
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1080.9 1174 50.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1079.3 1192 50.5
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 3.4e-309 1065.4 1188 50.0
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 2.2e-308 1062.8 1195 49.8
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 1.7e-305 1053.1 1189 49.0
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 3.6e-303 1045.4 1186 48.9
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 6.8e-294 1014.6 865 60.7
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 1.5e-288 996.9 904 57.2
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 6.6e-281 971.5 1161 47.5
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 1.8e-278 963.4 1201 45.7
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.5e-272 943.7 834 59.0
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.1e-259 901.0 842 54.5
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.1e-243 847.8 1092 44.9
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.9e-238 828.6 1192 41.4
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.8e-233 813.9 1203 41.1
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 3.3e-232 809.7 860 49.8
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 9.7e-232 808.1 717 58.7
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.8e-222 777.3 1087 42.4
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 4.5e-205 719.5 1171 37.8
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.7e-194 682.9 998 41.1
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.9e-166 591.3 1185 35.8
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.6e-162 578.2 1201 35.0
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 2.9e-127 461.1 424 59.4
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 3.2e-118 431.0 526 46.0
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.6e-117 427.6 524 48.3
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.8e-114 417.2 330 61.2
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 8.5e-103 379.8 522 44.3
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 2.6e-83 315.1 356 50.3
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 3.4e-83 314.7 1615 23.9
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.2e-76 290.8 382 45.5
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.8e-76 290.4 231 63.2
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.2e-69 269.6 233 61.8
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.3e-63 249.6 261 54.0
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.2e-61 243.0 253 53.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 4.9e-58 231.1 217 58.1
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.6e-55 220.3 207 56.5
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.6e-54 217.6 221 55.2
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 9.5e-46 190.3 158 60.1
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.2e-45 187.6 175 54.3
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 7.1e-41 174.1 318 37.4
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 7.1e-41 174.1 318 37.4
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.6e-40 171.4 318 37.1
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.0e-40 171.0 318 37.1
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.7e-39 169.5 237 43.9
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.1e-36 158.7 144 56.9
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 2.7e-32 145.6 250 41.6
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 2.7e-32 145.6 250 41.6
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.0e-32 144.4 313 36.1
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 2.3e-31 142.5 250 41.6
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 4.0e-28 131.7 364 28.8
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.4e-25 123.2 77 74.0
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.5e-19 103.2 95 56.8
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.8e-19 101.3 241 28.6
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.0e-18 100.5 131 45.8
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 7.9e-16 90.9 58 63.8
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.3e-15 90.1 81 49.4
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.5e-14 85.9 73 56.2
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 5.7e-14 84.7 424 24.3
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 3.7e-13 82.0 238 25.2
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.8e-12 79.7 65 61.5


User provided reference genes

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