Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold66G22257 Striga asiatica HOM05D003599 ORTHO05D004221 4.9e-145 517.7 248 100.0
SGA_v2.0_scaffold5G03126 Striga asiatica HOM05D003599 ORTHO05D004221 4.1e-14 82.8 48 75.0
SGA_v2.0_scaffold260G45866 Striga asiatica HOM05D003599 ORTHO05D004221 1.5e-13 80.9 48 75.0
Dinv43470 Davidia involucrata HOM05D003599 ORTHO05D004221 2.0e-13 80.5 95 48.4
CAN.G1393.20 Capsicum annuum HOM05D003599 ORTHO05D004221 3.4e-13 79.7 56 62.5
unitig_0.g1376 Utricularia gibba HOM05D003599 ORTHO05D004221 4.5e-13 79.3 48 70.8
GSVIVG01032046001 Vitis vinifera HOM05D003599 ORTHO05D004221 4.5e-13 79.3 96 47.9
MSTRG.17057 Avicennia marina HOM05D003599 ORTHO05D004221 5.9e-13 79.0 48 70.8
DCAR_029635 Daucus carota HOM05D003599 ORTHO05D004221 5.9e-13 79.0 48 70.8
Dinv09382 Davidia involucrata HOM05D003599 ORTHO05D004221 5.9e-13 79.0 95 46.3
Oeu034893.1 Olea europaea HOM05D003599 ORTHO05D004221 5.9e-13 79.0 48 70.8
SalBow4G2031 Salvia bowleyana HOM05D003599 ORTHO05D004221 5.9e-13 79.0 48 70.8
unitig_61.g26447 Utricularia gibba HOM05D003599 ORTHO05D004221 7.7e-13 78.6 48 70.8
Migut.B01342 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.3e-12 77.8 47 72.3
AUR62009368 Chenopodium quinoa HOM05D003599 ORTHO05D004221 1.7e-12 77.4 48 68.8
AUR62023049 Chenopodium quinoa HOM05D003599 ORTHO05D004221 1.7e-12 77.4 48 68.8
Migut.N01485 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.7e-12 77.4 48 68.8
Ciclev10030514m.g Citrus clementina HOM05D003599 ORTHO05D004221 2.2e-12 77.0 83 49.4
Rhsim07G0053800 Rhododendron simsii HOM05D003599 ORTHO05D004221 2.2e-12 77.0 90 45.6
Sed0001465 Sechium edule HOM05D003599 ORTHO05D004221 2.2e-12 77.0 48 68.8
Sed0009971 Sechium edule HOM05D003599 ORTHO05D004221 2.2e-12 77.0 47 70.2
Ah.10g024830 Amaranthus hybridus HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 66.7
CiPaw.13G001900 Carya illinoinensis HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
ClCG10G012550 Citrullus lanatus HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
Haze_03250 Corylus avellana HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
MELO3C023955.2 Cucumis melo HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
Lj7C568T3 Lonicera japonica HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 66.7
MD02G1316400 Malus domestica HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
MD07G1005500 Malus domestica HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
Prupe.2G007800 Prunus persica HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
PGR044G0248 Punica granatum HOM05D003599 ORTHO05D004221 2.9e-12 76.6 93 46.2
QL04p003920 Quercus lobata HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
QL04p004288 Quercus lobata HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
TWI53G1897 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
TAR369G0496 Trochodendron aralioides HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
vmacro13648 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 2.9e-12 76.6 48 68.8
Atru.chr11.2631 Acer truncatum HOM05D003599 ORTHO05D004221 3.8e-12 76.3 48 66.7
EL10Ac2g04309 Beta vulgaris HOM05D003599 ORTHO05D004221 3.8e-12 76.3 44 70.5
Cc02_g27450 Coffea canephora HOM05D003599 ORTHO05D004221 3.8e-12 76.3 80 51.2
CsaV3_3G032340 Cucumis sativus L. HOM05D003599 ORTHO05D004221 3.8e-12 76.3 48 66.7
ECA248G3304 Erigeron canadensis HOM05D003599 ORTHO05D004221 3.8e-12 76.3 76 53.9
RcHm_v2.0_Chr4g0410621 Rosa chinensis HOM05D003599 ORTHO05D004221 3.8e-12 76.3 48 66.7
Sc11g0009360 Simmondsia chinensis HOM05D003599 ORTHO05D004221 3.8e-12 76.3 48 66.7
Eucgr.J01252 Eucalyptus grandis HOM05D003599 ORTHO05D004221 5.0e-12 75.9 48 66.7
Actinidia31045 Actinidia chinensis HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
CSS0018905 Camellia sinensis var. sinensis HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
COL.COLO4_23904 Corchorus olitorius HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
Manes.07G003200 Manihot esculenta HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
Nn7g36074 Nelumbo nucifera HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
PSO339G0158 Papaver somniferum HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
PSO384G0358 Papaver somniferum HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
Thecc.01G414600 Theobroma cacao HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
TWI73G0659 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 6.5e-12 75.5 48 66.7
Duzib268G0099 Durio zibethinus HOM05D003599 ORTHO05D004221 8.5e-12 75.1 48 64.6
Gohir.D08G167000 Gossypium hirsutum HOM05D003599 ORTHO05D004221 8.5e-12 75.1 48 64.6
Gorai.004G174400 Gossypium raimondii HOM05D003599 ORTHO05D004221 8.5e-12 75.1 48 64.6
HanXRQChr01g0017271 Helianthus annuus HOM05D003599 ORTHO05D004221 8.5e-12 75.1 48 66.7
Lsat_1_v5_gn_1_110320 Lactuca sativa HOM05D003599 ORTHO05D004221 8.5e-12 75.1 48 66.7
FvH4_4g12380 Fragaria vesca HOM05D003599 ORTHO05D004221 1.1e-11 74.7 48 66.7
FAN07G2146 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-11 74.7 48 66.7
FAN12G0010 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-11 74.7 48 66.7
FAN12G0382 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-11 74.7 48 66.7
FAN17G0189 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-11 74.7 48 66.7
FAN22G1903 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.1e-11 74.7 48 66.7
MBI01_g25789_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 1.1e-11 74.7 63 57.1
Potri.009G065300 Populus trichocarpa HOM05D003599 ORTHO05D004221 1.1e-11 74.7 63 55.6
CANSAT56G1134 Cannabis sativa HOM05D003599 ORTHO05D004221 1.4e-11 74.3 48 64.6
Sabra16G0166600 Salix brachista HOM05D003599 ORTHO05D004221 1.4e-11 74.3 44 70.5
Glyma.06G207751 Glycine max HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 66.7
Glyma.08G152400 Glycine max HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 66.7
Glyma.15G271800 Glycine max HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 66.7
Gohir.A08G146100 Gossypium hirsutum HOM05D003599 ORTHO05D004221 1.9e-11 73.9 47 66.0
Lj3g0008997 Lotus japonicus HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 66.7
Medtr3g027610 Medicago truncatula HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 66.7
Nitab4.5_0001542g0140 Nicotiana tabacum HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 64.6
Nitab4.5_0004883g0020 Nicotiana tabacum HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 64.6
Peaxi162Scf00058g00215 Petunia axillaris HOM05D003599 ORTHO05D004221 1.9e-11 73.9 44 68.2
Phvul.005G037000 Phaseolus vulgaris HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 66.7
Sabra09G0048500 Salix brachista HOM05D003599 ORTHO05D004221 1.9e-11 73.9 48 64.6
arahy.Tifrunner.gnm1.ann1.V362W9 Arachis hypogaea HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
arahy.Tifrunner.gnm1.ann1.X69RYV Arachis hypogaea HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
Lj3g0018349 Lotus japonicus HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
Lalb_Chr20g0108091 Lupinus albus HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
Lalb_Chr25g0283241 Lupinus albus HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
Potri.001G271200 Populus trichocarpa HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
TPR.G20345 Trifolium pratense HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
TPR.G26308 Trifolium pratense HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
VMungo1080G1621 Vigna mungo HOM05D003599 ORTHO05D004221 2.5e-11 73.6 48 64.6
Aqoxy1G00213 Aquilegia oxysepala HOM05D003599 ORTHO05D004221 3.2e-11 73.2 48 62.5
Ca_26231_v3 Cicer arietinum L. HOM05D003599 ORTHO05D004221 3.2e-11 73.2 48 66.7
SGA_v2.0_scaffold225G43036 Striga asiatica HOM05D000969 ORTHO05D000899 3.2e-11 73.2 36 83.3
SGA_v2.0_scaffold66G22383 Striga asiatica HOM05D000969 ORTHO05D004221 3.2e-11 73.2 44 68.2
BraA04t16417Z Brassica rapa HOM05D003599 ORTHO05D004221 4.2e-11 72.8 59 54.2
Solyc01g086750.4 Solanum lycopersicum HOM05D003599 ORTHO05D004221 4.2e-11 72.8 48 62.5
Sopen01g033750 Solanum pennellii HOM05D003599 ORTHO05D004221 4.2e-11 72.8 48 62.5
BolC4t25662H Brassica oleracea HOM05D003599 ORTHO05D004221 5.5e-11 72.4 51 60.8
Thhalv10010065m.g Eutrema salsugineum HOM05D003599 ORTHO05D004221 7.2e-11 72.0 48 62.5
Glyma.11G137151 Glycine max HOM05D003599 ORTHO05D004221 7.2e-11 72.0 71 52.1
Psat5g207160 Pisum sativum HOM05D003599 ORTHO05D004221 7.2e-11 72.0 48 64.6
THA.LOC104801983 Tarenaya hassleriana HOM05D003599 ORTHO05D004221 7.2e-11 72.0 69 50.7
Aa31LG10G7230 Aethionema arabicum HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
AL5G32710 Arabidopsis lyrata HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
AT3G52140 Arabidopsis thaliana HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
BcaB02g08585 Brassica carinata HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
BcaC02g09276 Brassica carinata HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
BcaNung06096 Brassica carinata HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
A04p07220 Brassica napus HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
A09p45200 Brassica napus HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
C04p40780 Brassica napus HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
C08p27410 Brassica napus HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
BolC8t50358H Brassica oleracea HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
BraA09t39983Z Brassica rapa HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
Carub.0005s1848 Capsella rubella HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
CARHR161880 Cardamine hirsuta HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
Os02g0717400 Oryza sativa ssp. japonica HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 60.4
Sp5g10140 Schrenkiella parvula HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 62.5
Zm00001eb252790 Zea mays HOM05D003599 ORTHO05D004221 9.4e-11 71.6 48 60.4
Cpa.g.sc945.1 Carica papaya HOM05D003599 ORTHO05D004221 1.2e-10 71.2 48 62.5
ATR0605G051 Amborella trichopoda HOM05D003599 ORTHO05D004221 1.6e-10 70.9 64 53.1
arahy.Tifrunner.gnm1.ann1.7I49QA Arachis hypogaea HOM05D003599 ORTHO05D004221 1.6e-10 70.9 48 62.5
arahy.Tifrunner.gnm1.ann1.SKP1EQ Arachis hypogaea HOM05D003599 ORTHO05D004221 1.6e-10 70.9 48 62.5
Psat1g032800 Pisum sativum HOM05D003599 ORTHO05D004221 1.6e-10 70.9 44 65.9
Glyma.03G039901 Glycine max HOM05D003599 ORTHO05D004221 2.1e-10 70.5 48 64.6
Glyma.20G040200 Glycine max HOM05D003599 ORTHO05D004221 2.1e-10 70.5 48 62.5
SHI28919 Sapria himalayana HOM05D003599 ORTHO05D004221 2.7e-10 70.1 48 60.4
CDE05G2577 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 3.6e-10 69.7 44 63.6
Zm00001eb189030 Zea mays HOM05D003599 ORTHO05D004221 4.7e-10 69.3 48 58.3
Nn6g34660 Nelumbo nucifera HOM05D003599 ORTHO05D004221 2.3e-09 67.0 46 56.5
Medtr0321s0030 Medicago truncatula HOM05D003599 ORTHO05D004221 3.0e-09 66.6 43 67.4
SEGI_10833 Sequoiadendron giganteum HOM05D003599 ORTHO05D004221 8.8e-09 65.1 64 50.0
Pp3c16_5830 Physcomitrium patens HOM05D003599 ORTHO05D004221 5.7e-08 62.4 48 56.2
CBR_g110 Chara braunii HOM05D003599 ORTHO05D004221 7.4e-08 62.0 67 47.8
Mapoly0060s0041 Marchantia polymorpha HOM05D003599 ORTHO05D004221 1.3e-07 61.2 67 46.3
Pp3c5_14160 Physcomitrium patens HOM05D003599 ORTHO05D004221 6.3e-07 58.9 48 52.1
SalBow3G3120 Salvia bowleyana HOM05D000969 ORTHO05D000899 2.4e-06 57.0 27 85.2
unitig_699.g19870 Utricularia gibba HOM05D000969 ORTHO05D000899 2.4e-06 57.0 37 64.9
SGA_v2.0_scaffold32G12998 Striga asiatica HOM05D000969 ORTHO05D000899 3.1e-06 56.6 27 85.2
unitig_747.g21230 Utricularia gibba HOM05D000969 ORTHO05D000899 3.1e-06 56.6 27 85.2
Cc02_g19790 Coffea canephora HOM05D000969 ORTHO05D000899 4.1e-06 56.2 29 75.9
MSTRG.27761 Avicennia marina HOM05D000969 ORTHO05D000899 5.3e-06 55.8 27 81.5
MSTRG.5317 Avicennia marina HOM05D000969 ORTHO05D000899 7.0e-06 55.5 27 81.5
SGA_v2.0_scaffold219G42528 Striga asiatica HOM05D000969 ORTHO05D000899 7.0e-06 55.5 27 81.5
unitig_21.g20720 Utricularia gibba HOM05D000969 ORTHO05D000899 7.0e-06 55.5 27 85.2
MSTRG.20217 Avicennia marina HOM05D000969 ORTHO05D000899 9.1e-06 55.1 27 81.5
DCAR_001688 Daucus carota HOM05D000969 ORTHO05D000899 9.1e-06 55.1 27 81.5


User provided reference genes

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