Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold65G22232 Striga asiatica HOM05D000200 ORTHO05D017191 6.2e-58 227.3 116 100.0
SGA_v2.0_scaffold65G22233 Striga asiatica HOM05D000200 ORTHO05D001546 5.5e-14 81.3 48 91.7
Gohir.A12G132200 Gossypium hirsutum HOM05D000200 ORTHO05D001546 4.4e-11 71.6 47 83.0
Nitab4.5_0000146g0020 Nicotiana tabacum HOM05D000200 ORTHO05D001546 7.5e-11 70.9 46 82.6
Nitab4.5_0001258g0020 Nicotiana tabacum HOM05D000200 ORTHO05D001546 7.5e-11 70.9 46 82.6
SalBow2G3495 Salvia bowleyana HOM05D000200 ORTHO05D001546 7.5e-11 70.9 45 86.7
Sopen02g004940 Solanum pennellii HOM05D000200 ORTHO05D001546 7.5e-11 70.9 46 82.6
Glyma.20G102900 Glycine max HOM05D000200 ORTHO05D001546 9.8e-11 70.5 46 82.6
Peaxi162Scf00334g00120 Petunia axillaris HOM05D000200 ORTHO05D001546 9.8e-11 70.5 46 84.8
Prupe.1G349100 Prunus persica HOM05D000200 ORTHO05D001546 1.3e-10 70.1 47 80.9
VMungo0720G1272 Vigna mungo HOM05D000200 ORTHO05D001546 1.3e-10 70.1 48 77.1
CAN.G912.8 Capsicum annuum HOM05D000200 ORTHO05D001546 1.7e-10 69.7 46 80.4
FAN07G1663 Fragaria x ananassa HOM05D000200 ORTHO05D001546 1.7e-10 69.7 46 80.4
Gohir.D12G135800 Gossypium hirsutum HOM05D000200 ORTHO05D001546 1.7e-10 69.7 47 78.7
Gorai.008G147000 Gossypium raimondii HOM05D000200 ORTHO05D001546 1.7e-10 69.7 47 78.7
CSS0011464 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 2.2e-10 69.3 46 80.4
CSS0039822 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 2.2e-10 69.3 46 80.4
FvH4_4g37130 Fragaria vesca HOM05D000200 ORTHO05D001546 2.2e-10 69.3 46 80.4
FAN12G3959 Fragaria x ananassa HOM05D000200 ORTHO05D001546 2.2e-10 69.3 46 80.4
Hma1.2p1_0044F.1_g026280 Hydrangea macrophylla HOM05D000200 ORTHO05D001546 2.2e-10 69.3 46 80.4
RcHm_v2.0_Chr4g0446931 Rosa chinensis HOM05D000200 ORTHO05D001546 2.2e-10 69.3 46 80.4
Cfa008775 Carpinus fangiana HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
CiPaw.06G062300 Carya illinoinensis HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
COL.COLO4_33104 Corchorus olitorius HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Haze_11787 Corylus avellana HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Dinv13015 Davidia involucrata HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Duzib052G0298 Durio zibethinus HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Duzib132G0767 Durio zibethinus HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Gohir.A03G166200 Gossypium hirsutum HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
QL03p045482 Quercus lobata HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Rhsim12G0089200 Rhododendron simsii HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
Thecc.02G154900 Theobroma cacao HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
vmacro15995 Vaccinium macrocarpon HOM05D000200 ORTHO05D001546 2.8e-10 68.9 45 82.2
arahy.Tifrunner.gnm1.ann1.L4L3GZ Arachis hypogaea HOM05D000200 ORTHO05D001546 3.7e-10 68.6 46 78.3
arahy.Tifrunner.gnm1.ann1.PP514R Arachis hypogaea HOM05D000200 ORTHO05D001546 3.7e-10 68.6 46 78.3
Lj5g0006945 Lotus japonicus HOM05D000200 ORTHO05D001546 3.7e-10 68.6 45 82.2
Psat6g233720 Pisum sativum HOM05D000200 ORTHO05D001546 3.7e-10 68.6 45 82.2
TPR.G4106 Trifolium pratense HOM05D000200 ORTHO05D001546 3.7e-10 68.6 45 82.2
Glyma.10G286300 Glycine max HOM05D000200 ORTHO05D001546 4.8e-10 68.2 46 78.3
Gohir.D02G189400 Gossypium hirsutum HOM05D000200 ORTHO05D001546 4.8e-10 68.2 45 80.0
Gorai.005G212100 Gossypium raimondii HOM05D000200 ORTHO05D001546 4.8e-10 68.2 45 80.0
GSVIVG01034427001 Vitis vinifera HOM05D000200 ORTHO05D001546 4.8e-10 68.2 48 75.0
Atru.chr11.1236 Acer truncatum HOM05D000200 ORTHO05D001546 6.3e-10 67.8 45 80.0
AL1G58000 Arabidopsis lyrata HOM05D000200 ORTHO05D001546 6.3e-10 67.8 48 72.9
CiPaw.05G171900 Carya illinoinensis HOM05D000200 ORTHO05D001546 6.3e-10 67.8 45 80.0
FAN17G1852 Fragaria x ananassa HOM05D000200 ORTHO05D001546 6.3e-10 67.8 46 80.4
Lj3A846G61 Lonicera japonica HOM05D000200 ORTHO05D001546 6.3e-10 67.8 46 78.3
MD13G1003300 Malus domestica HOM05D000200 ORTHO05D001546 6.3e-10 67.8 45 80.0
Phvul.007G014600 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 6.3e-10 67.8 45 80.0
Potri.005G089200 Populus trichocarpa HOM05D000200 ORTHO05D001546 6.3e-10 67.8 46 76.1
Sabra05G0073400 Salix brachista HOM05D000200 ORTHO05D001546 6.3e-10 67.8 46 76.1
Cpa.g.sc60.82 Carica papaya HOM05D000200 ORTHO05D001546 8.3e-10 67.4 47 74.5
Cc11_g00550 Coffea canephora HOM05D000200 ORTHO05D001546 8.3e-10 67.4 49 71.4
Sed0014373 Sechium edule HOM05D000200 ORTHO05D001546 8.3e-10 67.4 42 85.7
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.1e-09 67.0 46 76.1
ECA234G0053 Erigeron canadensis HOM05D000200 ORTHO05D001546 1.1e-09 67.0 45 77.8
Lalb_Chr02g0143641 Lupinus albus HOM05D000200 ORTHO05D001546 1.1e-09 67.0 45 80.0
Sabra07G0063400 Salix brachista HOM05D000200 ORTHO05D001546 1.1e-09 67.0 48 72.9
AT1G50360 Arabidopsis thaliana HOM05D000200 ORTHO05D001546 1.4e-09 66.6 48 70.8
ClCG02G014140 Citrullus lanatus HOM05D000200 ORTHO05D001546 1.4e-09 66.6 46 78.3
Ciclev10030552m.g Citrus clementina HOM05D000200 ORTHO05D001546 1.4e-09 66.6 45 77.8
CsaV3_5G029000 Cucumis sativus L. HOM05D000200 ORTHO05D001546 1.4e-09 66.6 46 78.3
MD16G1004100 Malus domestica HOM05D000200 ORTHO05D001546 1.4e-09 66.6 45 77.8
Sed0005136 Sechium edule HOM05D000200 ORTHO05D001546 1.4e-09 66.6 46 78.3
THA.LOC104801596 Tarenaya hassleriana HOM05D000200 ORTHO05D001546 1.4e-09 66.6 48 72.9
unitig_26.g10598 Utricularia gibba HOM05D000200 ORTHO05D001546 1.4e-09 66.6 42 85.7
Actinidia23692 Actinidia chinensis HOM05D000200 ORTHO05D001546 1.8e-09 66.2 45 77.8
Ca_12382_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.8e-09 66.2 41 82.9
Ca_12389_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.8e-09 66.2 41 82.9
Manes.04G064300 Manihot esculenta HOM05D000200 ORTHO05D001546 1.8e-09 66.2 45 77.8
Medtr1g114540 Medicago truncatula HOM05D000200 ORTHO05D001546 1.8e-09 66.2 45 77.8
Lsat_1_v5_gn_4_27700 Lactuca sativa HOM05D000200 ORTHO05D001546 2.4e-09 65.9 45 75.6
PGR142G0570 Punica granatum HOM05D000200 ORTHO05D001546 2.4e-09 65.9 44 79.5
TPR.G20487 Trifolium pratense HOM05D000200 ORTHO05D001546 2.4e-09 65.9 44 77.3
VMungo0251G0678 Vigna mungo HOM05D000200 ORTHO05D001546 2.4e-09 65.9 44 79.5
MSTRG.2068 Avicennia marina HOM05D000200 ORTHO05D001546 3.1e-09 65.5 45 77.8
MELO3C011755.2 Cucumis melo HOM05D000200 ORTHO05D001546 3.1e-09 65.5 46 76.1
DCAR_026880 Daucus carota HOM05D000200 ORTHO05D001546 3.1e-09 65.5 49 71.4
MBI03_g41224_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D001546 3.1e-09 65.5 48 75.0
Medtr1g023610 Medicago truncatula HOM05D000200 ORTHO05D001546 3.1e-09 65.5 42 78.6
Medtr1g038793 Medicago truncatula HOM05D000200 ORTHO05D001546 3.1e-09 65.5 42 78.6
Psat6g100120 Pisum sativum HOM05D000200 ORTHO05D001546 3.1e-09 65.5 42 78.6
Potri.007G074800 Populus trichocarpa HOM05D000200 ORTHO05D001546 3.1e-09 65.5 45 75.6
BcaB06g26065 Brassica carinata HOM05D000200 ORTHO05D001546 4.1e-09 65.1 48 70.8
CANSAT78G0397 Cannabis sativa HOM05D000200 ORTHO05D001546 4.1e-09 65.1 52 69.2
DCAR_023474 Daucus carota HOM05D042326 ORTHO05D001546 4.1e-09 65.1 57 64.9
AL3G33610 Arabidopsis lyrata HOM05D000200 ORTHO05D001546 5.4e-09 64.7 46 73.9
Carub.0003s1986 Capsella rubella HOM05D000200 ORTHO05D001546 5.4e-09 64.7 46 73.9
CARHR095490 Cardamine hirsuta HOM05D000200 ORTHO05D001546 5.4e-09 64.7 46 73.9
Migut.E00682 Erythranthe guttata HOM05D000200 ORTHO05D001546 5.4e-09 64.7 45 77.8
Thhalv10011193m.g Eutrema salsugineum HOM05D000200 ORTHO05D001546 5.4e-09 64.7 46 71.7
Thhalv10019925m.g Eutrema salsugineum HOM05D000200 ORTHO05D001546 5.4e-09 64.7 46 73.9
HanXRQChr16g0526111 Helianthus annuus HOM05D000200 ORTHO05D001546 5.4e-09 64.7 46 73.9
BcaB04g19073 Brassica carinata HOM05D000200 ORTHO05D001546 7.0e-09 64.3 46 71.7
A06p03200 Brassica napus HOM05D000200 ORTHO05D001546 7.0e-09 64.3 48 68.8
BraA06t23531Z Brassica rapa HOM05D000200 ORTHO05D001546 7.0e-09 64.3 48 68.8
DCAR_023473 Daucus carota HOM05D000200 ORTHO05D001546 7.0e-09 64.3 46 73.9
Hund08632 Selenicereus undatus HOM05D000200 ORTHO05D001546 7.0e-09 64.3 46 71.7
THA.LOC104826514 Tarenaya hassleriana HOM05D000200 ORTHO05D001546 7.0e-09 64.3 48 70.8
AT3G19960 Arabidopsis thaliana HOM05D000200 ORTHO05D001546 9.1e-09 63.9 46 73.9
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 9.1e-09 63.9 46 71.7
Carub.0001s3944 Capsella rubella HOM05D000200 ORTHO05D001546 9.1e-09 63.9 48 68.8
AUR62017730 Chenopodium quinoa HOM05D000200 ORTHO05D001546 9.1e-09 63.9 46 71.7
Eucgr.G02585 Eucalyptus grandis HOM05D000200 ORTHO05D001546 9.1e-09 63.9 44 77.3
Gohir.A13G061800 Gossypium hirsutum HOM05D000200 ORTHO05D001546 9.1e-09 63.9 46 76.1
Gorai.013G068300 Gossypium raimondii HOM05D000200 ORTHO05D001546 9.1e-09 63.9 46 76.1
Sp1g37190 Schrenkiella parvula HOM05D000200 ORTHO05D001546 9.1e-09 63.9 46 71.7
Aa31LG8G6700 Aethionema arabicum HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 68.8
BcaB02g11133 Brassica carinata HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 68.8
BcaC05g27444 Brassica carinata HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 68.8
A05p20250 Brassica napus HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 68.8
C05p33980 Brassica napus HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 68.8
C06p05430 Brassica napus HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 66.7
BolC5t32133H Brassica oleracea HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 68.8
BolC6t35648H Brassica oleracea HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 66.7
BraA05t20935Z Brassica rapa HOM05D000200 ORTHO05D001546 1.2e-08 63.5 48 68.8
Glyma.09G284800 Glycine max HOM05D000200 ORTHO05D001546 1.2e-08 63.5 44 79.5
Glyma.20G001300 Glycine max HOM05D000200 ORTHO05D001546 1.2e-08 63.5 44 79.5
Lj2g0009687 Lotus japonicus HOM05D000200 ORTHO05D001546 1.2e-08 63.5 41 80.5
Phvul.003G002200 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 1.2e-08 63.5 41 78.0
TWI53G0999 Tripterygium wilfordii HOM05D000200 ORTHO05D001546 1.2e-08 63.5 45 75.6
Migut.L00868 Erythranthe guttata HOM05D000200 ORTHO05D001546 1.6e-08 63.2 46 73.9
Sp3g17980 Schrenkiella parvula HOM05D000200 ORTHO05D001546 1.6e-08 63.2 48 68.8
CARHR040370 Cardamine hirsuta HOM05D000200 ORTHO05D001546 2.0e-08 62.8 48 64.6
HPP92_022656 Vanilla planifolia HOM05D000200 ORTHO05D001546 2.0e-08 62.8 48 66.7
BcaC05g28391 Brassica carinata HOM05D000200 ORTHO05D001546 2.7e-08 62.4 46 69.6
A05p29180 Brassica napus HOM05D000200 ORTHO05D001546 2.7e-08 62.4 46 69.6
C05p44670 Brassica napus HOM05D000200 ORTHO05D001546 2.7e-08 62.4 46 69.6
BolC5t33195H Brassica oleracea HOM05D000200 ORTHO05D001546 2.7e-08 62.4 46 69.6
BraA05t21802Z Brassica rapa HOM05D000200 ORTHO05D001546 2.7e-08 62.4 46 69.6
Lalb_Chr10g0094881 Lupinus albus HOM05D000200 ORTHO05D001546 2.7e-08 62.4 45 75.6
BolC6t35649H Brassica oleracea HOM05D000200 ORTHO05D001546 3.5e-08 62.0 48 64.6
Gohir.D13G060200 Gossypium hirsutum HOM05D000200 ORTHO05D001546 3.5e-08 62.0 46 73.9
Lsat_1_v5_gn_9_1440 Lactuca sativa HOM05D000200 ORTHO05D017191 3.5e-08 62.0 92 43.5
BolC3t17366H Brassica oleracea HOM05D000200 ORTHO05D001546 4.5e-08 61.6 42 76.2
Nn4g25132 Nelumbo nucifera HOM05D000200 ORTHO05D001546 5.9e-08 61.2 45 73.3
Sc10g0006880 Simmondsia chinensis HOM05D000200 ORTHO05D001546 5.9e-08 61.2 48 64.6
Aqoxy3G04316 Aquilegia oxysepala HOM05D000200 ORTHO05D001546 7.7e-08 60.8 45 71.1
A03p41500 Brassica napus HOM05D000200 ORTHO05D001546 1.0e-07 60.5 42 73.8
C03p50820 Brassica napus HOM05D000200 ORTHO05D001546 1.0e-07 60.5 42 73.8
BraA03t13304Z Brassica rapa HOM05D000200 ORTHO05D001546 1.0e-07 60.5 42 73.8
BcaNung06533 Brassica carinata HOM05D000200 ORTHO05D001546 1.3e-07 60.1 45 71.1
Os10g0488800 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D001546 1.3e-07 60.1 49 57.1
Nn3g18592 Nelumbo nucifera HOM05D000200 ORTHO05D001546 1.7e-07 59.7 45 68.9
C06p05470 Brassica napus HOM05D000200 ORTHO05D001546 2.3e-07 59.3 48 62.5
PSO063G1244 Papaver somniferum HOM05D000200 ORTHO05D001546 2.3e-07 59.3 42 73.8
PSO782G3069 Papaver somniferum HOM05D000200 ORTHO05D001546 2.3e-07 59.3 42 73.8
BcaC04g20725 Brassica carinata HOM05D000200 ORTHO05D001546 2.9e-07 58.9 46 65.2
Zm00001eb221190 Zea mays HOM05D000200 ORTHO05D001546 2.9e-07 58.9 49 59.2
Lsat_1_v5_gn_2_80520 Lactuca sativa HOM05D000200 ORTHO05D017191 3.8e-07 58.5 45 71.1
TAR629G2757 Trochodendron aralioides HOM05D000200 ORTHO05D001546 5.0e-07 58.2 39 76.9
Aa31LG10G3920 Aethionema arabicum HOM05D000200 ORTHO05D001546 1.5e-06 56.6 48 60.4
Zm00001eb045250 Zea mays HOM05D000200 ORTHO05D001546 1.5e-06 56.6 49 55.1
CDE04G3051 Ceratophyllum demersum HOM05D000200 ORTHO05D001546 7.2e-06 54.3 45 62.2
CDE07G0600 Ceratophyllum demersum HOM05D000200 ORTHO05D001546 7.2e-06 54.3 45 62.2
Lj6C713G17 Lonicera japonica HOM05D000200 ORTHO05D001546 7.2e-06 54.3 49 55.1
Lj6C708G9 Lonicera japonica HOM05D000200 ORTHO05D001546 9.5e-06 53.9 49 55.1


User provided reference genes

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