Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold65G22171 Striga asiatica HOM05D001483 ORTHO05D001463 1.2e-127 459.9 233 100.0
SGA_v2.0_scaffold2G01417 Striga asiatica HOM05D001483 ORTHO05D001463 7.7e-15 85.1 46 89.1
Migut.E00679 Erythranthe guttata HOM05D000456 ORTHO05D000916 1.8e-11 73.9 74 58.1
Hund07095 Selenicereus undatus HOM05D001483 ORTHO05D001463 5.2e-11 72.4 50 66.0
MSTRG.27982 Avicennia marina HOM05D001483 ORTHO05D001463 2.0e-10 70.5 42 73.8
Migut.N02080 Erythranthe guttata HOM05D001483 ORTHO05D001463 2.6e-10 70.1 99 42.4
unitig_26.g9484 Utricularia gibba HOM05D001483 ORTHO05D001463 4.4e-10 69.3 45 71.1
MSTRG.2071 Avicennia marina HOM05D000456 ORTHO05D000916 5.7e-10 68.9 88 50.0
Migut.E00680 Erythranthe guttata HOM05D000456 ORTHO05D000916 7.5e-10 68.6 79 53.2
MSTRG.2070 Avicennia marina HOM05D000456 ORTHO05D000916 9.7e-10 68.2 79 50.6
MSTRG.13676 Avicennia marina HOM05D000456 ORTHO05D000916 2.8e-09 66.6 63 52.4
Actinidia16811 Actinidia chinensis HOM05D001483 ORTHO05D001463 3.7e-09 66.2 43 69.8
Actinidia35562 Actinidia chinensis HOM05D001483 ORTHO05D001463 4.8e-09 65.9 45 64.4
CSS0019490 Camellia sinensis var. sinensis HOM05D001483 ORTHO05D001463 4.8e-09 65.9 42 69.0
Oeu012117.1 Olea europaea HOM05D001483 ORTHO05D001463 6.3e-09 65.5 90 40.0
GSVIVG01031148001 Vitis vinifera HOM05D001483 ORTHO05D001463 6.3e-09 65.5 41 73.2
DCAR_003355 Daucus carota HOM05D001483 ORTHO05D001463 8.2e-09 65.1 44 70.5
unitig_21.g20040 Utricularia gibba HOM05D001483 ORTHO05D001463 8.2e-09 65.1 41 70.7
HanXRQChr04g0117011 Helianthus annuus HOM05D001483 ORTHO05D001463 1.1e-08 64.7 49 61.2
Oeu010917.1 Olea europaea HOM05D001483 ORTHO05D001463 1.1e-08 64.7 42 64.3
HanXRQChr11g0339301 Helianthus annuus HOM05D001483 ORTHO05D001463 1.4e-08 64.3 45 62.2
MBI19_g12137_MAGBIO Magnolia biondii HOM05D001483 ORTHO05D001463 1.8e-08 63.9 41 65.9
Hund21709 Selenicereus undatus HOM05D001483 ORTHO05D001463 1.8e-08 63.9 51 56.9
TAR636G1635 Trochodendron aralioides HOM05D001483 ORTHO05D001463 1.8e-08 63.9 41 65.9
CSS0025133 Camellia sinensis var. sinensis HOM05D001483 ORTHO05D001463 2.4e-08 63.5 42 66.7
Manes.08G117800 Manihot esculenta HOM05D001483 ORTHO05D001463 2.4e-08 63.5 43 65.1
CAN.G1459.8 Capsicum annuum HOM05D001483 ORTHO05D001463 3.1e-08 63.2 47 57.4
Ca_00327_v3 Cicer arietinum L. HOM05D001483 ORTHO05D001463 3.1e-08 63.2 42 71.4
Cc02_g34030 Coffea canephora HOM05D001483 ORTHO05D001463 3.1e-08 63.2 40 75.0
MBI18_g21821_MAGBIO Magnolia biondii HOM05D001483 ORTHO05D001463 3.1e-08 63.2 41 68.3
Thecc.05G312700 Theobroma cacao HOM05D001483 ORTHO05D001463 3.1e-08 63.2 42 69.0
Duzib106G1142 Durio zibethinus HOM05D001483 ORTHO05D186092 4.1e-08 62.8 42 66.7
MSTRG.13674 Avicennia marina HOM05D000456 ORTHO05D000916 5.3e-08 62.4 63 49.2
Cpa.g.sc48.93 Carica papaya HOM05D001483 ORTHO05D001463 5.3e-08 62.4 42 66.7
Lsat_1_v5_gn_9_87820 Lactuca sativa HOM05D001483 ORTHO05D001463 5.3e-08 62.4 41 63.4
Prupe.6G321100 Prunus persica HOM05D001483 ORTHO05D001463 5.3e-08 62.4 89 39.3
Rhsim07G0187800 Rhododendron simsii HOM05D001483 ORTHO05D001463 5.3e-08 62.4 42 66.7
Sc16g0008650 Simmondsia chinensis HOM05D001483 ORTHO05D001463 5.3e-08 62.4 50 56.0
Cfa006626 Carpinus fangiana HOM05D001483 ORTHO05D001463 9.1e-08 61.6 42 61.9
Dinv30806 Davidia involucrata HOM05D001483 ORTHO05D001463 9.1e-08 61.6 40 70.0
Glyma.15G073200 Glycine max HOM05D001483 ORTHO05D001463 9.1e-08 61.6 41 70.7
Medtr2g013440 Medicago truncatula HOM05D001483 ORTHO05D001463 9.1e-08 61.6 42 71.4
Oeu047449.1 Olea europaea HOM05D001483 ORTHO05D001463 9.1e-08 61.6 43 60.5
vmacro02465 Vaccinium macrocarpon HOM05D001483 ORTHO05D001463 9.1e-08 61.6 41 65.9
VMungo0540G2228 Vigna mungo HOM05D001483 ORTHO05D001463 9.1e-08 61.6 41 73.2
CANSAT54G0666 Cannabis sativa HOM05D001483 ORTHO05D001463 1.2e-07 61.2 42 64.3
Gohir.A11G267900 Gossypium hirsutum HOM05D001483 ORTHO05D001463 1.2e-07 61.2 43 65.1
Gohir.D11G277800 Gossypium hirsutum HOM05D001483 ORTHO05D001463 1.2e-07 61.2 43 65.1
QL03p021016 Quercus lobata HOM05D001483 ORTHO05D001463 1.2e-07 61.2 42 64.3
QL03p021851 Quercus lobata HOM05D001483 ORTHO05D001463 1.2e-07 61.2 42 64.3
Haze_04142 Corylus avellana HOM05D001483 ORTHO05D001463 1.6e-07 60.8 42 59.5
Phvul.006G186300 Phaseolus vulgaris HOM05D001483 ORTHO05D001463 1.6e-07 60.8 99 36.4
SGA_v2.0_scaffold1G00393 Striga asiatica HOM05D001483 ORTHO05D001463 1.6e-07 60.8 42 64.3
TWI56G0117 Tripterygium wilfordii HOM05D001483 ORTHO05D001463 1.6e-07 60.8 42 66.7
Actinidia24337 Actinidia chinensis HOM05D001483 ORTHO05D001463 2.0e-07 60.5 83 39.8
Duzib177G1003 Durio zibethinus HOM05D001483 ORTHO05D001463 2.0e-07 60.5 42 66.7
Nitab4.5_0003658g0030 Nicotiana tabacum HOM05D001483 ORTHO05D001463 2.0e-07 60.5 40 62.5
Peaxi162Scf00037g01117 Petunia axillaris HOM05D001483 ORTHO05D001463 2.0e-07 60.5 40 62.5
Eucgr.B01915 Eucalyptus grandis HOM05D001483 ORTHO05D001463 2.7e-07 60.1 42 64.3
HanXRQChr11g0339251 Helianthus annuus HOM05D001483 ORTHO05D001463 2.7e-07 60.1 41 63.4
HanXRQChr11g0339731 Helianthus annuus HOM05D001483 ORTHO05D001463 2.7e-07 60.1 41 63.4
MD04G1201000 Malus domestica HOM05D001483 ORTHO05D001463 2.7e-07 60.1 86 38.4
Psat1g205480 Pisum sativum HOM05D001483 ORTHO05D001463 2.7e-07 60.1 48 58.3
Hma1.2p1_0209F.1_g088550 Hydrangea macrophylla HOM05D001483 ORTHO05D001463 3.5e-07 59.7 47 55.3
Lsat_1_v5_gn_9_87781 Lactuca sativa HOM05D001483 ORTHO05D001463 3.5e-07 59.7 41 61.0
SalBow2G1670 Salvia bowleyana HOM05D000456 ORTHO05D000916 3.5e-07 59.7 64 50.0
CiPaw.08G162100 Carya illinoinensis HOM05D001483 ORTHO05D001463 4.5e-07 59.3 43 58.1
HanXRQChr11g0339741 Helianthus annuus HOM05D001483 ORTHO05D001463 4.5e-07 59.3 41 63.4
PSO832G1773 Papaver somniferum HOM05D001483 ORTHO05D001463 4.5e-07 59.3 40 65.0
Potri.005G025700 Populus trichocarpa HOM05D001483 ORTHO05D001463 4.5e-07 59.3 43 58.1
Potri.013G017300 Populus trichocarpa HOM05D001483 ORTHO05D001463 4.5e-07 59.3 43 58.1
PGR083G1598 Punica granatum HOM05D001483 ORTHO05D001463 4.5e-07 59.3 41 63.4
Rhsim13G0012200 Rhododendron simsii HOM05D001483 ORTHO05D001463 4.5e-07 59.3 82 40.2
EL10Ac4g09918 Beta vulgaris HOM05D001483 ORTHO05D001463 5.9e-07 58.9 42 59.5
Ciclev10003772m.g Citrus clementina HOM05D001483 ORTHO05D001463 5.9e-07 58.9 42 61.9
DCAR_022147 Daucus carota HOM05D001483 ORTHO05D001463 5.9e-07 58.9 40 65.0
Gorai.007G300000 Gossypium raimondii HOM05D001483 ORTHO05D001463 5.9e-07 58.9 43 62.8
MD11G1305000 Malus domestica HOM05D001483 ORTHO05D001463 5.9e-07 58.9 82 39.0
PSO210G0621 Papaver somniferum HOM05D001483 ORTHO05D001463 5.9e-07 58.9 67 44.8
CSS0003911 Camellia sinensis var. sinensis HOM05D001483 ORTHO05D001463 7.7e-07 58.5 42 66.7
CSS0021527 Camellia sinensis var. sinensis HOM05D001483 ORTHO05D001463 7.7e-07 58.5 42 66.7
FAN27G2431 Fragaria x ananassa HOM05D001483 ORTHO05D001463 7.7e-07 58.5 42 59.5
PSO170G2785 Papaver somniferum HOM05D001483 ORTHO05D001463 7.7e-07 58.5 41 58.5
RcHm_v2.0_Chr2g0118901 Rosa chinensis HOM05D001483 ORTHO05D001463 7.7e-07 58.5 42 59.5
Sabra13G0016300 Salix brachista HOM05D001483 ORTHO05D001463 7.7e-07 58.5 42 59.5
Sabra13G0020300 Salix brachista HOM05D001483 ORTHO05D001463 7.7e-07 58.5 42 59.5
Duzib106G1680 Durio zibethinus HOM05D001483 ORTHO05D186281 1.0e-06 58.2 63 50.8
Hma1.2p1_1212F.1_g267280 Hydrangea macrophylla HOM05D001483 ORTHO05D001463 1.0e-06 58.2 40 65.0
Oeu012119.1 Olea europaea HOM05D001483 ORTHO05D001463 1.0e-06 58.2 90 36.7
Peaxi162Scf00067g02520 Petunia axillaris HOM05D001483 ORTHO05D001463 1.0e-06 58.2 41 58.5
Solyc09g074930.3 Solanum lycopersicum HOM05D001483 ORTHO05D001463 1.0e-06 58.2 96 37.5
TPR.G29047 Trifolium pratense HOM05D001483 ORTHO05D001463 1.0e-06 58.2 39 71.8
AUR62000766 Chenopodium quinoa HOM05D001483 ORTHO05D001463 1.3e-06 57.8 51 49.0
Cc03_g10150 Coffea canephora HOM05D001483 ORTHO05D001463 1.3e-06 57.8 45 55.6
Duzib128G1195 Durio zibethinus HOM05D001483 ORTHO05D001463 1.3e-06 57.8 42 66.7
FvH4_2g25450 Fragaria vesca HOM05D001483 ORTHO05D001463 1.3e-06 57.8 42 59.5
FAN15G2501 Fragaria x ananassa HOM05D001483 ORTHO05D001463 1.3e-06 57.8 42 59.5
FAN15G3652 Fragaria x ananassa HOM05D001483 ORTHO05D001463 1.3e-06 57.8 42 59.5
FAN20G0333 Fragaria x ananassa HOM05D001483 ORTHO05D001463 1.3e-06 57.8 42 59.5
FAN24G2312 Fragaria x ananassa HOM05D001483 ORTHO05D001463 1.3e-06 57.8 42 59.5
Glyma.13G240100 Glycine max HOM05D001483 ORTHO05D001463 1.3e-06 57.8 99 34.3
Lsat_1_v5_gn_9_87841 Lactuca sativa HOM05D001483 ORTHO05D001463 1.3e-06 57.8 43 60.5
PGSC0003DMG400011370 Solanum tuberosum HOM05D001483 ORTHO05D001463 1.3e-06 57.8 90 35.6
Lsat_1_v5_gn_9_88241 Lactuca sativa HOM05D001483 ORTHO05D001463 1.7e-06 57.4 49 46.9
Nn3g21444 Nelumbo nucifera HOM05D001483 ORTHO05D001463 1.7e-06 57.4 41 63.4
unitig_52.g17305 Utricularia gibba HOM05D000456 ORTHO05D000916 1.7e-06 57.4 32 84.4
GSVIVG01027980001 Vitis vinifera HOM05D001483 ORTHO05D001463 1.7e-06 57.4 40 62.5
arahy.Tifrunner.gnm1.ann1.USTZ5W Arachis hypogaea HOM05D004205 ORTHO05D001463 2.2e-06 57.0 93 40.9
AUR62005203 Chenopodium quinoa HOM05D001483 ORTHO05D001463 2.2e-06 57.0 51 47.1
COL.COLO4_10516 Corchorus olitorius HOM05D001483 ORTHO05D001463 2.2e-06 57.0 44 59.1
DCAR_018333 Daucus carota HOM05D001483 ORTHO05D001463 2.2e-06 57.0 42 59.5
Dinv19712 Davidia involucrata HOM05D001483 ORTHO05D001463 2.2e-06 57.0 41 61.0
Lsat_1_v5_gn_9_88040 Lactuca sativa HOM05D001483 ORTHO05D001463 2.2e-06 57.0 41 61.0
Prupe.8G258700 Prunus persica HOM05D001483 ORTHO05D001463 2.2e-06 57.0 39 64.1
QL12p027182 Quercus lobata HOM05D001483 ORTHO05D001463 2.2e-06 57.0 129 29.5
SalBow2G3366 Salvia bowleyana HOM05D001483 ORTHO05D001463 2.2e-06 57.0 42 59.5
PGSC0003DMG400024708 Solanum tuberosum HOM05D001483 ORTHO05D001463 2.2e-06 57.0 40 60.0
Lj1A28T43 Lonicera japonica HOM05D001483 ORTHO05D001463 2.9e-06 56.6 41 58.5
Potri.002G206000 Populus trichocarpa HOM05D001483 ORTHO05D001463 2.9e-06 56.6 47 59.6
Sopen09g029750 Solanum pennellii HOM05D001483 ORTHO05D001463 2.9e-06 56.6 96 35.4
MSTRG.17413 Avicennia marina HOM05D001483 ORTHO05D001463 3.8e-06 56.2 42 57.1
HanXRQChr13g0394341 Helianthus annuus HOM05D001483 ORTHO05D001463 3.8e-06 56.2 41 61.0
Lj5A421T58 Lonicera japonica HOM05D001483 ORTHO05D001463 3.8e-06 56.2 42 59.5
RcHm_v2.0_Chr6g0293681 Rosa chinensis HOM05D001483 ORTHO05D001463 3.8e-06 56.2 40 60.0
TAR633G2427 Trochodendron aralioides HOM05D001483 ORTHO05D001463 3.8e-06 56.2 41 63.4
CiPaw.07G021300 Carya illinoinensis HOM05D001483 ORTHO05D001463 5.0e-06 55.8 43 55.8
MD03G1285600 Malus domestica HOM05D001483 ORTHO05D001463 5.0e-06 55.8 40 62.5
Lj6g0011839 Lotus japonicus HOM05D001483 ORTHO05D001463 6.5e-06 55.5 43 60.5
Sp3g04330 Schrenkiella parvula HOM05D001483 ORTHO05D001463 6.5e-06 55.5 42 59.5
TWI12G1324 Tripterygium wilfordii HOM05D001483 ORTHO05D001463 6.5e-06 55.5 42 59.5
Ah.04g161140 Amaranthus hybridus HOM05D001483 ORTHO05D001463 8.5e-06 55.1 56 42.9
Aqoxy5G00725 Aquilegia oxysepala HOM05D001483 ORTHO05D001463 8.5e-06 55.1 50 56.0
Lsat_1_v5_gn_9_87901 Lactuca sativa HOM05D001483 ORTHO05D001463 8.5e-06 55.1 105 34.3
MD12G1213500 Malus domestica HOM05D001483 ORTHO05D001463 8.5e-06 55.1 101 36.6
Manes.05G063700 Manihot esculenta HOM05D001483 ORTHO05D001463 8.5e-06 55.1 41 58.5


User provided reference genes

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