Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 2.3e-221 771.9 391 100.0
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 4.9e-163 578.2 393 75.3
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 2.3e-160 569.3 408 74.5
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.9e-146 523.1 436 66.7
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 8.1e-126 454.5 408 61.3
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 3.1e-125 452.6 414 61.6
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 7.1e-122 441.4 418 59.8
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 7.1e-122 441.4 418 59.6
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 3.5e-121 439.1 397 62.5
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 7.9e-121 438.0 404 60.4
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 8.7e-120 434.5 407 60.0
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.5e-119 433.7 379 64.1
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.5e-119 433.7 401 59.9
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.9e-119 433.3 398 58.3
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.9e-119 433.3 417 59.5
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.3e-119 432.6 413 59.3
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 2.1e-118 429.9 418 58.4
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 2.8e-118 429.5 405 59.5
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 8.1e-118 427.9 410 58.0
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.5e-116 423.7 408 59.8
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 3.4e-116 422.5 418 58.9
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 4.5e-116 422.2 419 58.2
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.6e-116 421.4 403 59.6
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 3.8e-115 419.1 408 58.8
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.4e-115 418.3 403 59.1
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 6.4e-115 418.3 407 59.5
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 6.4e-115 418.3 419 57.0
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 8.4e-115 417.9 402 58.7
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 8.4e-115 417.9 418 58.4
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 5.5e-114 415.2 400 58.0
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 9.3e-114 414.5 400 58.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 9.3e-114 414.5 418 57.4
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 6.0e-113 411.8 418 56.9
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 1.3e-112 410.6 468 51.7
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.3e-112 409.8 400 57.5
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.0e-112 409.5 400 56.8
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 3.0e-112 409.5 416 55.8
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 3.9e-112 409.1 392 55.9
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.9e-111 406.8 421 56.1
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 5.6e-111 405.2 399 56.4
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.6e-110 403.7 422 55.2
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 6.2e-110 401.7 458 52.2
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 5.3e-109 398.7 422 54.3
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 7.6e-108 394.8 415 56.1
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 1.0e-107 394.4 404 55.4
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 3.8e-107 392.5 399 54.6
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.1e-106 391.0 430 54.0
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.4e-106 390.6 412 53.2
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 9.3e-106 387.9 399 54.1
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.6e-105 387.1 407 55.3
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.7e-105 386.3 412 55.3
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.0e-104 384.4 437 54.0
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.3e-104 384.0 432 53.7
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 2.3e-104 383.3 349 60.7
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 3.0e-104 382.9 412 55.3
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 6.7e-104 381.7 396 53.5
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 2.5e-103 379.8 397 51.4
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 4.3e-103 379.0 440 53.2
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 9.6e-103 377.9 361 60.1
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.1e-102 376.7 406 52.0
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.8e-102 376.3 396 54.0
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 6.3e-102 375.2 407 54.5
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 8.2e-102 374.8 407 54.5
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 8.2e-102 374.8 410 54.1
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.4e-101 374.0 395 53.7
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 1.4e-101 374.0 395 54.2
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.8e-101 373.6 396 51.3
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 3.1e-101 372.9 407 54.5
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 6.9e-101 371.7 411 51.3
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 9.0e-101 371.3 407 54.3
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 9.0e-101 371.3 398 52.0
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.2e-100 370.9 427 50.8
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.2e-100 370.9 410 52.7
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.5e-100 370.5 398 52.3
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 2.6e-100 369.8 414 52.2
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.4e-100 369.4 385 54.0
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.7e-99 367.1 396 53.5
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 2.2e-99 366.7 396 53.3
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 3.8e-99 365.9 345 61.4
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 6.5e-99 365.2 418 51.4
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 8.4e-99 364.8 396 53.0
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 2.5e-98 363.2 414 52.2
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.5e-98 363.2 326 61.0
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.2e-98 362.5 428 50.2
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 9.3e-98 361.3 395 52.2
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 9.3e-98 361.3 322 61.5
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.0e-96 357.8 359 57.4
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 5.1e-96 355.5 432 49.1
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 5.1e-96 355.5 406 52.5
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 4.8e-94 349.0 414 51.2
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 5.3e-93 345.5 356 55.1
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.2e-91 340.1 331 61.3
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 6.5e-91 338.6 444 48.0
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.4e-90 337.4 428 48.1
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.8e-88 330.5 288 66.0
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-88 330.1 288 66.0
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.7e-88 328.6 289 65.4
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 2.0e-87 327.0 356 54.5
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 2.5e-87 326.6 302 61.3
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.3e-87 326.2 324 57.4
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 9.7e-87 324.7 406 48.5
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.3e-86 324.3 416 47.6
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.9e-83 313.2 332 55.4
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.2e-81 307.8 346 52.3
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.7e-81 306.6 294 60.5
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 9.7e-79 298.1 323 54.5
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.4e-77 293.5 281 56.2
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 8.0e-73 278.5 354 48.9
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 3.7e-62 243.0 226 60.2
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.0e-60 237.3 337 45.4
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 4.9e-54 216.1 298 44.0
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 2.9e-51 206.8 407 35.1
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.8e-49 200.3 408 35.3
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 2.3e-48 197.2 137 78.8
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 9.2e-45 185.3 143 73.4
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 6.6e-43 179.1 213 48.4
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 4.7e-41 172.9 124 72.6
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 7.0e-37 159.1 420 29.5
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 4.9e-22 109.8 89 62.9
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 3.2e-21 107.1 103 59.2
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 4.3e-18 96.7 101 50.5
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 9.6e-18 95.5 109 55.0
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.1e-16 92.0 97 59.8
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.0e-16 90.1 90 61.1
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.7e-14 84.7 102 42.2
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.1e-13 82.0 184 35.3
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.0e-07 61.2 98 40.8


User provided reference genes

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