Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.4e-163 579.7 327 100.0
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.2e-108 396.4 338 69.8
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 4.0e-94 349.0 328 66.5
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.1e-91 340.9 340 60.3
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 5.6e-80 302.0 325 60.6
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 4.5e-77 292.4 340 57.9
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 5.8e-77 292.0 331 56.5
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 8.4e-76 288.1 336 56.0
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 7.1e-75 285.0 336 57.4
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 7.1e-75 285.0 337 53.7
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.7e-74 283.1 338 57.4
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 2.3e-73 280.0 347 55.9
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.7e-73 278.1 332 53.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 8.7e-73 278.1 344 56.4
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.3e-72 276.2 339 54.9
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 3.3e-72 276.2 335 53.1
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.3e-72 275.8 342 53.2
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.6e-71 273.9 340 53.8
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 3.4e-69 266.2 347 52.2
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 5.8e-69 265.4 341 53.4
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.3e-68 264.2 365 50.1
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.7e-68 263.8 342 52.3
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 8.4e-68 261.5 339 51.0
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.4e-67 260.8 338 50.3
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.5e-67 260.0 332 51.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-66 257.7 341 48.1
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.0e-66 255.4 332 50.3
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 2.3e-65 253.4 341 51.6
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 5.7e-64 248.8 321 52.3
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.6e-63 247.3 335 49.9
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 4.8e-63 245.7 348 50.3
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 8.2e-63 245.0 331 49.2
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.1e-62 244.6 346 51.7
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 2.4e-62 243.4 341 48.7
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 5.3e-62 242.3 421 42.8
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 5.3e-62 242.3 340 53.2
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 6.9e-62 241.9 344 48.3
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 6.9e-62 241.9 336 49.1
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 6.9e-62 241.9 329 47.4
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.2e-61 241.1 303 50.5
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 7.6e-61 238.4 332 47.9
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.0e-60 238.0 349 50.4
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.7e-60 237.3 327 51.1
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.2e-60 236.9 323 52.3
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 2.2e-60 236.9 332 47.9
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.2e-60 236.9 341 45.7
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.9e-60 236.5 346 48.8
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 3.8e-60 236.1 328 47.9
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 3.8e-60 236.1 323 52.0
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.0e-60 235.7 323 51.7
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 5.0e-60 235.7 339 51.9
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.1e-59 234.6 339 53.1
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.4e-59 234.2 346 49.4
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 2.5e-59 233.4 327 49.5
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 2.5e-59 233.4 334 44.9
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 5.5e-59 232.3 306 49.3
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.3e-59 231.5 339 49.6
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.3e-59 231.5 339 46.3
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 7.9e-58 228.4 336 46.4
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 7.9e-58 228.4 313 50.8
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.8e-57 227.3 375 44.8
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.5e-56 224.2 336 48.5
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 2.5e-56 223.4 341 46.9
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 3.3e-56 223.0 326 50.0
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 3.3e-56 223.0 332 47.6
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 5.7e-56 222.2 324 51.9
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 3.7e-55 219.5 332 46.4
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 6.3e-55 218.8 333 48.3
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.8e-54 217.2 328 50.0
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 2.4e-54 216.9 303 46.9
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 3.1e-54 216.5 336 45.5
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.1e-54 216.1 311 50.8
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 6.9e-54 215.3 342 47.1
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 3.4e-53 213.0 282 51.8
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.3e-52 211.1 326 46.3
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 3.8e-52 209.5 346 47.1
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.8e-52 209.5 339 46.9
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 4.2e-51 206.1 323 45.5
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 5.5e-51 205.7 333 43.8
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 3.6e-50 203.0 338 45.3
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 7.9e-50 201.8 335 44.2
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.4e-49 201.1 331 43.5
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.4e-49 201.1 302 45.4
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.0e-48 197.2 336 42.3
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 4.3e-48 196.1 336 42.0
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 4.3e-48 196.1 280 42.9
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 5.7e-48 195.7 336 42.0
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 5.7e-48 195.7 503 36.6
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.3e-47 194.5 336 41.4
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.7e-47 194.1 352 41.8
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.8e-47 193.4 302 44.4
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 4.8e-47 192.6 313 44.7
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.1e-46 191.4 257 54.1
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 5.3e-46 189.1 350 42.3
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 5.3e-46 189.1 324 44.1
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.0e-45 187.2 291 41.6
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.6e-45 186.8 325 39.4
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 5.9e-45 185.7 328 40.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.0e-44 184.9 247 49.0
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.3e-44 184.5 328 46.0
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 4.2e-43 179.5 335 39.7
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 7.2e-43 178.7 280 46.4
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 2.7e-42 176.8 348 40.5
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.8e-41 174.1 327 43.1
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 2.3e-41 173.7 291 44.3
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.2e-39 167.2 293 39.2
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 5.3e-38 162.5 336 37.8
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.5e-37 161.0 284 40.5
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 2.2e-36 157.1 329 36.8
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 2.2e-36 157.1 342 37.1
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 3.2e-35 153.3 251 43.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 4.7e-34 149.4 300 37.3
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 6.1e-34 149.1 352 38.4
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.0e-33 148.3 256 44.1
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 4.0e-33 146.4 292 37.7
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 6.7e-33 145.6 297 37.4
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-32 144.8 337 34.4
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.0e-32 144.1 342 35.7
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.6e-32 143.7 306 34.6
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 3.7e-31 139.8 259 45.6
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 8.2e-31 138.7 335 37.9
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.1e-30 138.3 278 40.6
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 4.5e-29 132.9 232 41.8
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.5e-27 127.1 124 65.3
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.7e-26 123.6 317 35.6
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 3.6e-26 123.2 227 41.4
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 4.4e-24 116.3 317 34.4
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 5.7e-24 115.9 197 41.6
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 8.3e-23 112.1 108 60.2
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.1e-22 110.2 142 50.7
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.0e-22 109.0 110 62.7
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.2e-20 104.0 289 31.1
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.4e-19 98.6 97 57.7
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.7e-18 97.1 196 34.2
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 3.6e-18 96.7 92 64.1
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 8.0e-18 95.5 378 29.6
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 8.8e-17 92.0 92 57.6
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 6.3e-15 85.9 202 34.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.1e-14 83.6 279 35.5
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.6e-13 81.3 93 54.8
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 4.0e-09 66.6 80 47.5
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 1.5e-08 64.7 310 28.4
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 5.7e-08 62.8 112 39.3
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 5.4e-06 56.2 45 57.8


User provided reference genes

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