Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold658G53387 Striga asiatica HOM05D002804 ORTHO05D003755 3.8e-107 392.1 304 100.0
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 1.4e-48 197.6 310 51.3
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 2.3e-43 180.3 319 51.1
Cc02_g36880 Coffea canephora HOM05D002804 ORTHO05D003755 6.2e-41 172.2 253 66.0
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 1.5e-39 167.5 302 40.7
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 3.4e-39 166.4 316 50.3
CAN.G1379.37 Capsicum annuum HOM05D002804 ORTHO05D003755 8.4e-38 161.8 304 52.3
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 3.2e-37 159.8 309 50.5
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 3.2e-37 159.8 268 44.0
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 5.5e-37 159.1 317 40.1
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 9.3e-37 158.3 305 40.7
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 3.0e-35 153.3 200 46.5
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 4.3e-34 149.4 247 44.5
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 3.7e-33 146.4 237 42.2
SalBow4G0464 Salvia bowleyana HOM05D002804 ORTHO05D003755 6.3e-33 145.6 299 59.5
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 3.1e-32 143.3 317 42.0
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 5.0e-30 136.0 202 46.0
Actinidia17724 Actinidia chinensis HOM05D002804 ORTHO05D003755 3.2e-29 133.3 192 53.1
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 3.2e-29 133.3 239 55.6
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.2e-29 133.3 237 44.3
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.3e-27 127.1 302 50.7
HanXRQChr07g0193711 Helianthus annuus HOM05D002804 ORTHO05D003755 3.9e-27 126.3 275 54.2
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 2.2e-25 120.6 204 49.0
MD04G1183300 Malus domestica HOM05D002804 ORTHO05D003755 8.2e-25 118.6 204 61.8
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.8e-24 117.5 178 48.3
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 2.4e-24 117.1 319 42.3
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 1.2e-23 114.8 241 42.3
Duzib116G0715 Durio zibethinus HOM05D002804 ORTHO05D003755 1.2e-23 114.8 294 50.0
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 2.0e-23 114.0 87 78.2
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 4.5e-23 112.8 86 66.3
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-23 112.8 86 66.3
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.9e-23 112.5 86 77.9
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 5.9e-23 112.5 87 63.2
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.0e-22 111.7 185 44.3
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 2.9e-22 110.2 86 65.1
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 2.9e-22 110.2 86 65.1
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 5.0e-22 109.4 202 48.0
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 5.0e-22 109.4 84 61.9
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-22 109.4 203 40.4
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 5.0e-22 109.4 204 43.6
CSS0012453 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 8.5e-22 108.6 121 64.5
Carub.0006s0240 Capsella rubella HOM05D002804 ORTHO05D003755 8.5e-22 108.6 241 54.4
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 1.1e-21 108.2 204 49.5
Prupe.6G301800 Prunus persica HOM05D002804 ORTHO05D003755 1.1e-21 108.2 206 60.7
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 1.1e-21 108.2 86 75.6
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 1.4e-21 107.8 163 44.8
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.9e-21 107.5 191 47.6
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 3.2e-21 106.7 199 46.7
CSS0047980 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 3.2e-21 106.7 168 53.6
EL10Ac6g13418 Beta vulgaris HOM05D002804 ORTHO05D003755 4.2e-21 106.3 286 49.3
ECA236G4290 Erigeron canadensis HOM05D002804 ORTHO05D003755 5.5e-21 105.9 272 50.0
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 5.5e-21 105.9 84 59.5
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 7.2e-21 105.5 305 36.7
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 9.4e-21 105.1 255 37.6
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 9.4e-21 105.1 204 36.3
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 9.4e-21 105.1 175 43.4
Gorai.006G131500 Gossypium raimondii HOM05D002804 ORTHO05D003755 4.7e-20 102.8 302 50.0
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 4.7e-20 102.8 83 59.0
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 6.1e-20 102.4 119 58.0
Gohir.D09G113800 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.0e-19 101.7 302 50.0
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 6.7e-19 99.0 88 59.1
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 6.7e-19 99.0 114 49.1
Ah.02g130510 Amaranthus hybridus HOM05D002804 ORTHO05D003755 1.5e-18 97.8 286 51.0
Lj5A49T37 Lonicera japonica HOM05D002804 ORTHO05D003755 7.4e-18 95.5 203 47.3
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 1.7e-17 94.4 85 69.4
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 8.2e-17 92.0 205 39.5
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 2.6e-15 87.0 145 48.3
SEGI_29468 Sequoiadendron giganteum HOM05D002804 ORTHO05D003755 7.7e-15 85.5 86 61.6
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 2.9e-14 83.6 204 36.3
AUR62005554 Chenopodium quinoa HOM05D002804 ORTHO05D003755 2.1e-12 77.4 83 62.7
MD12G1196700 Malus domestica HOM05D002804 ORTHO05D003755 4.7e-12 76.3 176 57.4
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 8.0e-12 75.5 81 63.0
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 5.2e-11 72.8 139 35.3
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 2.0e-10 70.9 164 32.3
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 3.3e-10 70.1 54 64.8
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 4.4e-10 69.7 158 31.6
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 7.5e-10 68.9 207 27.5
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 9.7e-10 68.6 70 48.6
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 4.8e-09 66.2 54 59.3
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 4.1e-08 63.2 86 43.0
AUR62024179 Chenopodium quinoa HOM05D002804 ORTHO05D003755 1.6e-07 61.2 57 50.9
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 2.7e-07 60.5 79 40.5
Sc14g0008930 Simmondsia chinensis HOM05D002804 ORTHO05D003755 3.5e-07 60.1 40 65.0
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 5.9e-07 59.3 207 25.6
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.9e-07 59.3 207 25.6
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-06 57.8 206 25.2


User provided reference genes

Program Settings