Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 0.0e+00 1613.2 860 100.0
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 1.2e-230 803.9 663 66.7
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 4.7e-227 792.0 665 66.2
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 7.3e-220 768.1 676 62.7
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 6.9e-194 681.8 661 55.7
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.1e-191 674.5 662 56.0
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 2.3e-189 666.8 662 56.0
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.7e-187 659.4 661 55.5
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 6.2e-187 658.7 662 55.6
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 2.4e-186 656.8 661 54.0
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 5.3e-186 655.6 662 55.7
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 2.9e-184 649.8 662 54.7
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.2e-182 644.4 664 55.3
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.2e-182 644.4 662 54.8
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 2.1e-182 643.7 662 54.2
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.3e-181 641.0 662 55.0
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.8e-181 640.6 662 53.5
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 2.3e-181 640.2 662 55.0
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.9e-181 639.4 661 53.6
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 3.3e-180 636.3 608 58.4
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 4.3e-180 636.0 664 53.6
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 1.0e-176 624.8 661 52.0
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.0e-176 624.8 661 52.3
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 9.3e-175 618.2 662 52.1
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.0e-173 614.8 666 52.6
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.5e-172 610.9 662 52.1
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.3e-172 609.4 662 51.1
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 4.3e-172 609.4 662 51.7
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 7.4e-172 608.6 662 52.0
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 6.3e-171 605.5 662 51.2
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 2.4e-170 603.6 662 50.3
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.3e-170 602.4 662 50.9
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 6.9e-170 602.1 663 50.4
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 2.9e-168 596.7 663 50.5
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 6.5e-168 595.5 543 60.4
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.9e-167 594.0 662 49.8
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.9e-167 594.0 662 50.2
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.9e-167 594.0 664 50.8
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 7.2e-167 592.0 662 49.7
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 9.3e-167 591.7 659 49.6
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.3e-165 587.8 662 50.9
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.8e-165 587.4 659 49.3
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.8e-165 587.4 659 49.3
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 3.9e-165 586.3 662 49.7
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 8.7e-165 585.1 676 48.7
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 2.5e-164 583.6 657 49.5
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 3.3e-164 583.2 661 50.1
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 9.7e-164 581.6 657 48.9
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 9.7e-164 581.6 660 49.1
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 8.2e-163 578.6 656 49.5
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 8.2e-163 578.6 657 48.7
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.1e-162 578.2 662 49.8
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 5.3e-162 575.9 656 49.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 5.3e-162 575.9 664 49.4
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 7.7e-161 572.0 657 49.5
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 1.3e-160 571.2 652 49.8
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.7e-160 570.9 660 49.8
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 2.2e-160 570.5 660 49.2
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.9e-160 570.1 662 49.4
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 3.8e-160 569.7 664 49.1
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 6.5e-160 568.9 671 49.3
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 8.5e-160 568.5 660 49.5
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 3.2e-159 566.6 685 46.9
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.2e-158 564.7 621 50.4
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 7.9e-158 562.0 698 47.1
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 1.8e-157 560.8 609 51.7
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.3e-157 560.5 698 47.6
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 3.0e-157 560.1 548 56.9
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 3.9e-157 559.7 548 56.9
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.1e-156 558.1 633 49.1
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 3.3e-156 556.6 662 47.0
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 4.8e-155 552.7 680 47.5
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.0e-153 547.4 603 50.9
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 3.4e-153 546.6 609 51.2
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 5.9e-153 545.8 621 49.8
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.2e-152 543.9 658 46.4
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 7.2e-151 538.9 656 47.7
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 9.4e-151 538.5 662 47.1
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 6.7e-149 532.3 661 46.3
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 3.3e-148 530.0 660 47.9
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.2e-147 525.4 570 52.1
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.4e-146 524.6 661 46.3
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 1.6e-145 521.2 574 51.4
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 4.5e-145 519.6 566 51.9
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.3e-144 518.1 536 53.0
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 2.1e-142 510.8 610 50.0
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 6.3e-139 499.2 664 44.1
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 9.1e-138 495.4 665 44.4
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.9e-136 490.3 492 54.9
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.8e-133 481.1 657 44.1
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.3e-131 474.9 487 55.9
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.1e-130 471.9 475 56.2
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 9.1e-130 468.8 667 43.5
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.5e-127 461.5 628 45.4
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 3.7e-123 446.8 689 40.5
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 6.8e-109 399.4 388 56.2
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 6.4e-107 392.9 662 38.7
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.2e-105 388.7 411 51.8
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.6e-105 388.3 666 40.4
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 1.7e-104 384.8 498 45.6
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.8e-101 374.8 626 38.8
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 6.2e-78 296.6 670 31.5
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 5.1e-72 276.9 394 43.4
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.5e-71 275.4 653 29.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 7.9e-65 253.1 288 49.0
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.5e-63 248.8 544 32.7
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 4.3e-63 247.3 557 33.9
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 4.3e-63 247.3 557 33.9
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 5.3e-61 240.4 392 41.6
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.0e-59 236.1 402 38.3
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 5.3e-53 213.8 658 26.9
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 2.5e-47 194.9 296 39.2
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 2.2e-46 191.8 296 38.9
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 2.6e-36 158.3 163 52.8
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 2.2e-35 155.2 168 47.0
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.9e-34 152.1 134 59.0
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.2e-33 149.4 185 47.0
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.4e-32 146.0 393 26.7
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 3.0e-32 144.8 194 45.4
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 3.0e-32 144.8 171 43.9
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 2.0e-31 142.1 219 40.6
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.0e-31 142.1 150 50.7
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 9.7e-31 139.8 195 40.5
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 6.3e-30 137.1 152 51.3
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 2.1e-25 122.1 155 45.8
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.3e-19 102.8 349 28.1
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 6.5e-19 100.5 123 43.1
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.5e-18 98.6 415 26.0
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 7.2e-18 97.1 112 50.9
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.6e-17 95.9 381 29.4
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.8e-16 92.4 152 37.5
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 1.5e-15 89.4 75 58.7
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.0e-11 76.6 84 48.8
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 4.2e-10 71.2 96 43.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 7.2e-10 70.5 92 38.0
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 1.6e-09 69.3 105 40.0
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 1.0e-08 66.6 110 39.1
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.2e-07 63.2 90 40.0
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 2.6e-07 62.0 57 57.9
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 5.7e-07 60.8 53 54.7
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.8e-06 58.5 43 60.5
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.8e-06 58.5 53 52.8


User provided reference genes

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