Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.9e-82 308.5 160 100.0
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 4.3e-65 251.5 202 68.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 8.9e-63 243.8 203 65.5
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.3e-58 229.2 196 64.8
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.1e-55 220.3 143 77.6
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.5e-54 216.5 204 59.8
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.1e-51 206.1 192 58.9
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.0e-50 203.8 202 56.4
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.0e-50 203.8 195 59.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.0e-50 203.8 198 58.1
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.7e-50 203.0 192 58.3
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.7e-50 203.0 192 58.3
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.3e-50 202.6 203 58.1
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.3e-50 202.6 200 56.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 3.0e-50 202.2 192 58.3
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.1e-50 201.4 192 57.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.1e-49 200.3 194 56.7
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.9e-49 199.5 200 55.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 3.3e-49 198.7 189 56.1
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 4.3e-49 198.4 200 58.5
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 5.6e-49 198.0 197 56.3
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.2e-48 196.8 123 82.9
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.2e-48 196.8 198 54.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.2e-48 196.8 120 82.5
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.6e-48 196.4 201 54.2
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.8e-48 195.7 195 56.4
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.7e-48 194.9 204 53.4
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 4.7e-48 194.9 199 53.3
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.2e-48 194.5 200 56.0
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 6.2e-48 194.5 197 54.8
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 8.1e-48 194.1 193 56.0
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.1e-48 194.1 123 79.7
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.1e-47 193.7 201 53.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.1e-47 193.7 120 81.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.1e-47 193.7 120 82.5
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.4e-47 193.4 123 81.3
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.4e-47 193.4 120 80.8
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.4e-47 193.4 201 53.2
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.4e-47 193.4 198 54.0
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.4e-47 193.4 123 81.3
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.8e-47 193.0 207 53.1
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 2.4e-47 192.6 197 55.8
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 3.1e-47 192.2 204 55.4
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.2e-47 191.4 123 78.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 5.2e-47 191.4 184 58.2
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.2e-47 191.4 188 58.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 6.8e-47 191.0 188 57.4
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 6.8e-47 191.0 180 57.8
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 6.8e-47 191.0 123 79.7
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 6.8e-47 191.0 120 81.7
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 6.8e-47 191.0 207 52.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.2e-46 190.3 123 79.7
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.5e-46 189.9 165 63.6
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-46 189.9 192 54.7
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.5e-46 189.9 197 53.3
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.6e-46 189.1 181 58.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 3.4e-46 188.7 197 54.3
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 3.4e-46 188.7 123 78.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 3.4e-46 188.7 120 80.8
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.4e-46 188.7 117 78.6
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 4.4e-46 188.3 199 54.8
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.4e-46 188.3 200 54.0
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 7.6e-46 187.6 120 80.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.6e-46 187.6 191 54.5
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 9.9e-46 187.2 203 53.2
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 9.9e-46 187.2 115 83.5
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 9.9e-46 187.2 201 54.2
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 9.9e-46 187.2 123 77.2
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-45 186.8 192 54.2
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.7e-45 186.4 117 80.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.7e-45 186.4 123 78.9
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.2e-45 186.0 197 53.3
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.9e-45 185.7 200 53.5
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.9e-45 184.9 196 55.6
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.9e-45 184.9 196 55.6
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 4.9e-45 184.9 123 77.2
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.4e-45 184.5 183 54.6
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.4e-44 183.3 117 75.2
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-44 183.3 181 55.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.9e-44 183.0 122 74.6
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.4e-44 182.6 187 53.5
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.2e-44 181.8 131 70.2
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.1e-44 181.0 190 51.6
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 7.1e-44 181.0 187 54.5
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.2e-44 180.6 173 58.4
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.2e-43 180.3 195 51.8
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.2e-43 180.3 118 76.3
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 2.1e-43 179.5 189 53.4
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.1e-43 179.5 193 51.3
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.1e-43 179.5 185 53.0
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.1e-43 179.5 185 53.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.5e-43 178.7 192 52.6
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 4.6e-43 178.3 187 51.9
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 4.6e-43 178.3 193 52.3
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 6.0e-43 177.9 153 64.1
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 6.0e-43 177.9 200 52.5
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 7.8e-43 177.6 198 52.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.8e-43 177.6 193 51.3
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 7.8e-43 177.6 115 75.7
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.0e-42 177.2 120 74.2
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.0e-42 177.2 186 52.2
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-42 176.8 188 54.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-42 176.8 188 54.8
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 3.9e-42 175.3 197 49.7
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.9e-42 175.3 153 62.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 8.7e-42 174.1 150 62.7
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.5e-41 173.3 123 74.8
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.5e-41 173.3 123 74.8
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.9e-41 172.9 150 63.3
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.9e-41 172.9 195 51.8
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.9e-41 172.9 198 51.0
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.5e-41 172.6 150 63.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 3.3e-41 172.2 123 74.0
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.3e-41 172.2 123 74.0
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 4.3e-41 171.8 195 51.3
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 7.3e-41 171.0 118 70.3
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 9.6e-41 170.6 150 61.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 9.6e-41 170.6 201 51.7
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.2e-40 170.2 115 75.7
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.6e-40 169.9 123 73.2
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.1e-40 169.5 150 62.7
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.6e-40 168.7 119 70.6
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.2e-40 167.9 121 72.7
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.0e-39 165.2 201 50.2
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.5e-38 163.3 203 48.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.4e-38 162.2 108 78.7
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 3.8e-37 158.7 107 75.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 2.3e-34 149.4 89 76.4
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.9e-33 146.4 118 63.6
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.3e-33 145.6 155 52.9
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 9.6e-33 144.1 120 63.3
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.2e-32 141.4 125 62.4
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 8.1e-32 141.0 119 62.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.5e-30 136.7 119 59.7
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.3e-29 133.7 189 43.4
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 3.5e-27 125.6 78 76.9
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 6.7e-26 121.3 147 49.0
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.3e-23 111.7 156 46.2
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 9.0e-23 110.9 119 51.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.6e-19 100.1 67 73.1
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.0e-19 98.2 55 83.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.3e-18 96.3 119 45.4
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 9.6e-17 90.9 69 65.2
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 3.8e-13 79.0 64 64.1
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.0e-10 70.9 61 62.3
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 8.7e-10 67.8 40 82.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.5e-09 67.0 121 34.7
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 2.2e-08 63.2 118 36.4
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.8e-08 62.8 144 32.6
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.8e-07 60.1 57 56.1


User provided reference genes

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