Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 0.0e+00 1293.5 962 100.0
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.8e-227 793.5 955 70.5
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 7.9e-223 778.1 919 74.2
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.0e-222 776.2 870 75.9
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 5.3e-219 765.4 892 68.8
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 5.3e-219 765.4 847 74.6
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 7.9e-215 751.5 974 68.6
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.5e-209 731.9 933 67.7
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.6e-207 727.2 922 66.8
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.0e-206 724.5 909 69.2
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 5.7e-205 718.8 890 68.0
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 6.3e-204 715.3 898 67.6
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 9.1e-203 711.4 917 67.4
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.7e-201 707.2 904 70.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 8.5e-201 704.9 924 68.8
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 3.2e-200 703.0 944 61.5
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 9.7e-197 691.4 878 67.9
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.1e-195 688.0 936 68.1
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.3e-193 681.0 897 69.1
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.9e-192 677.2 897 58.3
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.9e-192 677.2 911 64.0
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.7e-191 673.3 915 64.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.6e-191 672.9 972 64.4
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 6.1e-191 672.2 805 74.2
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.1e-191 672.2 911 60.3
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 3.9e-190 669.5 925 66.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 6.7e-190 668.7 799 70.7
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 5.7e-189 665.6 938 68.4
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 5.7e-189 665.6 910 68.5
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 5.7e-189 665.6 904 63.1
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 9.7e-189 664.8 906 68.8
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.8e-188 663.3 914 66.4
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 4.8e-188 662.5 926 61.3
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 3.1e-187 659.8 936 65.5
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 3.1e-187 659.8 802 75.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 9.1e-187 658.3 913 65.7
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 3.5e-186 656.4 812 71.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 3.5e-186 656.4 900 68.9
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.7e-186 655.2 900 68.9
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 5.0e-185 652.5 909 66.8
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 8.5e-185 651.7 932 59.0
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 8.5e-185 651.7 981 63.2
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.5e-184 651.0 799 71.8
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.5e-184 651.0 900 67.7
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.9e-184 650.6 806 71.5
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.5e-184 650.2 810 69.6
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 4.7e-183 646.0 808 72.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.0e-182 644.8 802 75.6
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.8e-182 644.0 891 68.1
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 2.3e-182 643.7 911 68.5
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 4.0e-182 642.9 912 67.4
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.0e-182 642.9 934 63.9
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 5.2e-182 642.5 842 66.5
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 8.8e-182 641.7 901 64.9
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.2e-181 641.3 901 67.8
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.2e-181 641.3 932 67.4
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.5e-181 641.0 932 67.4
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 9.7e-181 638.3 905 67.1
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.3e-180 637.9 812 72.2
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.7e-180 637.5 904 60.7
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.2e-180 637.1 888 60.9
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 4.8e-180 636.0 827 68.8
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.8e-180 636.0 893 66.1
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 6.3e-180 635.6 929 64.8
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.4e-179 634.4 896 67.1
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 2.4e-179 633.6 819 72.2
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.4e-179 633.6 893 66.0
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 4.1e-179 632.9 808 71.4
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 9.1e-179 631.7 903 64.8
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 9.1e-179 631.7 883 64.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.2e-178 631.3 896 64.1
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.9e-178 629.0 930 58.4
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 8.5e-177 625.2 904 65.3
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.9e-176 624.0 798 70.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.2e-175 621.3 944 62.8
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.7e-175 620.2 889 65.2
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.0e-174 618.2 804 71.3
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.0e-174 618.2 807 69.3
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 3.0e-174 616.7 892 66.6
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.2e-173 614.8 936 66.2
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.0e-173 614.0 863 66.9
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.3e-172 611.3 919 61.2
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.7e-172 609.8 807 69.9
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 4.8e-172 609.4 808 70.2
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.8e-171 607.4 807 66.4
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 5.4e-171 605.9 974 60.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.2e-170 604.7 808 69.9
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.9e-170 602.4 808 69.2
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 7.7e-170 602.1 895 65.0
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.3e-169 601.3 934 62.4
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 7.2e-168 595.5 897 58.9
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.4e-166 591.3 806 69.7
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.8e-166 590.9 903 64.9
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.2e-166 589.3 889 55.3
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.5e-165 587.8 800 69.0
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.0e-165 587.4 808 70.0
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 4.4e-165 586.3 801 69.3
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 2.2e-164 583.9 875 63.2
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.8e-164 583.6 801 67.4
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 4.1e-163 579.7 797 69.3
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 5.4e-163 579.3 905 64.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.2e-163 578.6 895 57.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 4.5e-162 576.2 897 60.9
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.0e-161 575.1 888 64.3
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 6.6e-161 572.4 860 63.5
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 4.3e-160 569.7 886 63.2
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 7.3e-160 568.9 887 63.4
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.6e-159 567.8 895 64.1
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.1e-159 567.4 876 61.6
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.6e-159 566.6 904 63.3
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 5.2e-158 562.8 801 67.2
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 6.8e-158 562.4 723 69.4
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 8.9e-158 562.0 924 61.1
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 3.4e-157 560.1 719 69.5
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 4.4e-157 559.7 879 59.5
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.9e-156 557.0 936 60.1
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 5.4e-155 552.7 860 58.8
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.2e-154 551.6 855 60.5
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.0e-154 550.8 899 56.7
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 4.6e-154 549.7 894 56.6
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-153 548.1 876 62.7
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 8.6e-153 545.4 860 58.3
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 8.6e-153 545.4 860 58.3
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.8e-150 537.7 780 63.5
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.3e-150 537.3 864 55.1
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-149 535.0 800 61.5
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.0e-145 519.6 839 60.9
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-143 514.6 876 58.3
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 4.7e-143 513.1 876 58.6
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.2e-140 504.2 838 61.3
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.2e-140 504.2 778 52.2
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.7e-140 503.4 872 56.9
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.4e-139 500.7 867 58.6
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.7e-138 497.3 812 54.6
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 3.0e-137 493.8 888 51.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.6e-135 488.0 906 57.4
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 6.2e-135 486.1 851 56.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.9e-132 477.2 815 54.7
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.2e-131 473.8 741 61.5
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 5.4e-131 473.0 644 72.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.1e-118 430.6 733 58.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 6.9e-118 429.5 688 69.0
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 6.9e-118 429.5 961 49.4
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.8e-117 426.4 919 45.4
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-115 422.2 688 61.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 5.6e-112 409.8 964 35.0
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.8e-108 397.1 897 46.6
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.9e-107 394.8 650 71.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.9e-107 394.8 592 63.5
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 7.1e-107 392.9 645 75.8
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.6e-103 381.7 899 45.6
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.2e-103 379.8 904 51.5
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 3.4e-101 374.0 480 70.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.7e-100 371.7 787 49.4
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.0e-88 331.6 313 69.0
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 5.0e-84 317.0 934 46.1
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.0e-77 295.0 734 46.6
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.6e-77 294.7 656 55.2
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 5.5e-75 287.0 506 45.5
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-72 278.9 418 50.2
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.8e-71 274.6 538 44.2
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.2e-67 261.2 263 65.8
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.8e-63 248.1 593 56.5
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 5.9e-61 240.4 299 81.6
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 3.3e-51 208.0 160 65.6
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.4e-49 202.6 254 50.4
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.1e-46 193.0 220 50.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.6e-32 145.2 90 81.1
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.2e-29 136.3 186 43.0
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.0e-24 119.0 74 74.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.0e-20 106.7 119 52.1
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 3.3e-19 101.7 62 74.2
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 5.2e-17 94.4 64 75.0
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.0e-16 92.4 136 85.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.8e-09 69.3 63 49.2
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 5.3e-09 67.8 180 31.1
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 1.3e-07 63.2 206 27.7
SGA_v2.0_scaffold49G18355 Striga asiatica HOM05D003722 ORTHO05D050768 5.4e-06 57.8 31 80.6


User provided reference genes

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