Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.2e-269 932.6 456 100.0
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 4.1e-169 598.6 455 65.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.9e-168 594.7 455 64.8
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.9e-168 594.7 455 64.8
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 1.7e-167 593.2 453 65.6
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.6e-165 586.6 451 66.1
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.3e-164 582.8 454 63.9
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.6e-162 576.6 455 63.3
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.6e-162 576.6 453 63.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 3.7e-162 575.5 456 62.1
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 3.7e-162 575.5 453 62.7
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.1e-161 573.9 454 62.8
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.4e-161 573.5 455 63.3
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.8e-161 573.2 463 63.7
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 6.9e-161 571.2 461 62.0
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.2e-160 570.5 454 63.9
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 3.4e-160 568.9 456 63.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 7.7e-160 567.8 457 63.0
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.3e-159 567.0 457 63.0
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.7e-159 566.6 454 61.9
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.2e-159 566.2 449 63.5
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.9e-159 565.8 451 62.5
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 5.0e-159 565.1 455 62.6
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 6.5e-159 564.7 457 62.8
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.9e-158 563.1 459 62.7
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 3.2e-158 562.4 456 62.3
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 7.9e-157 557.8 453 61.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.0e-156 557.4 448 62.7
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-156 557.0 460 61.3
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.8e-156 556.6 457 61.7
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 2.3e-156 556.2 462 61.7
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 6.7e-156 554.7 457 60.6
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 8.8e-156 554.3 457 61.7
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 5.7e-155 551.6 446 63.0
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 5.7e-155 551.6 454 60.6
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 7.4e-155 551.2 456 61.6
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.7e-154 550.1 453 60.7
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.7e-154 550.1 454 61.0
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.2e-154 549.7 454 60.4
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.2e-154 549.7 482 58.1
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.2e-154 549.7 462 61.0
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 2.8e-154 549.3 453 61.1
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 3.7e-154 548.9 458 60.3
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 3.7e-154 548.9 453 59.8
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 6.3e-154 548.1 456 60.5
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.4e-153 547.0 456 59.9
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 2.4e-153 546.2 456 59.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.4e-153 546.2 452 60.8
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 4.1e-153 545.4 454 61.5
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 5.3e-153 545.0 462 59.3
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 5.3e-153 545.0 462 59.3
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 6.9e-153 544.7 452 59.5
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 9.1e-153 544.3 460 60.0
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 9.1e-153 544.3 460 60.0
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 9.1e-153 544.3 453 61.4
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.2e-152 543.9 460 59.8
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.5e-152 543.5 453 60.5
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.5e-152 543.5 453 60.5
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.0e-152 543.1 453 60.5
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.6e-152 542.7 453 60.5
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.4e-152 542.3 454 61.7
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 7.7e-152 541.2 455 59.1
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 7.7e-152 541.2 453 58.9
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 8.5e-151 537.7 449 59.2
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.4e-150 537.0 451 60.3
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 3.2e-150 535.8 456 59.4
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 9.4e-150 534.3 456 59.0
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 2.1e-149 533.1 451 59.9
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 2.7e-149 532.7 455 58.5
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 6.1e-149 531.6 455 58.7
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.0e-148 530.8 449 58.6
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.0e-148 530.8 449 59.9
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.8e-148 530.0 442 60.0
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 8.8e-148 527.7 449 59.5
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.6e-147 526.2 450 60.0
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 4.4e-147 525.4 457 57.8
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 5.7e-147 525.0 449 58.6
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 5.7e-147 525.0 456 58.3
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 9.7e-147 524.2 452 58.2
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.7e-146 523.5 452 58.0
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 4.8e-146 521.9 453 58.3
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.8e-145 520.0 456 58.6
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.4e-145 519.6 456 58.6
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 4.1e-145 518.8 458 58.5
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 5.3e-145 518.5 447 58.2
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.2e-144 517.3 533 53.5
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 4.5e-144 515.4 456 57.5
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 4.5e-144 515.4 449 57.2
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 7.7e-144 514.6 456 57.7
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 7.7e-144 514.6 456 57.7
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.3e-143 513.8 456 57.5
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 8.5e-143 511.1 456 57.0
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 4.2e-142 508.8 456 57.2
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 7.2e-142 508.1 456 56.6
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.2e-142 508.1 449 56.8
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-141 507.3 545 50.6
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 1.6e-141 506.9 456 57.2
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.1e-141 506.5 426 62.0
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.8e-137 493.4 464 54.5
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 2.5e-134 483.0 454 54.8
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 5.5e-134 481.9 453 57.4
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.1e-133 479.9 451 53.9
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 3.6e-133 479.2 446 54.3
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 5.2e-132 475.3 452 54.6
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 6.8e-132 474.9 453 53.6
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.3e-130 470.7 452 53.1
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 3.7e-130 469.2 454 50.7
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 4.1e-129 465.7 452 52.4
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.2e-128 464.2 449 52.8
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 7.2e-126 454.9 454 49.8
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 4.4e-123 445.7 611 42.4
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 4.4e-123 445.7 449 49.7
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.1e-121 439.1 450 49.6
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 3.8e-119 432.6 366 59.8
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 8.6e-111 404.8 363 57.9
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 4.0e-108 396.0 347 57.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 6.8e-108 395.2 475 44.2
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 4.9e-106 389.0 436 49.5
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 2.0e-104 383.6 367 56.1
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 7.3e-94 348.6 438 45.0
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.7e-88 330.1 210 75.2
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 8.7e-87 325.1 425 41.6
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.4e-84 317.0 441 39.7
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 9.0e-84 315.1 334 48.5
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.1e-73 281.6 161 79.5
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.7e-72 276.9 161 77.6
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 3.9e-71 273.1 199 67.3
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.8e-69 266.9 152 79.6
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 4.0e-68 263.1 361 41.8
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 7.6e-67 258.8 183 66.1
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.6e-64 251.1 165 69.1
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.4e-57 228.0 175 60.0
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 5.0e-50 203.0 118 81.4
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 9.4e-49 198.7 448 32.1
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 4.8e-45 186.4 170 55.9
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.1e-36 156.8 106 69.8
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 6.5e-34 149.4 94 71.3
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.6e-32 144.8 88 78.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 1.8e-28 131.3 199 39.7
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.9e-25 121.3 240 34.6
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 5.3e-20 103.2 77 62.3
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.9e-18 97.4 112 50.9
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.5e-17 95.1 161 38.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.1e-16 91.3 55 70.9
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.7e-16 90.1 60 63.3
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 4.8e-13 80.1 67 55.2
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 6.3e-13 79.7 47 70.2
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 2.8e-08 64.3 72 47.2


User provided reference genes

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