Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 2.8e-210 734.9 356 100.0
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 4.0e-180 634.8 358 85.2
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.2e-179 633.3 358 84.9
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 3.4e-179 631.7 358 84.6
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 4.4e-179 631.3 360 84.2
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 1.6e-176 622.9 357 84.0
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.9e-175 618.2 358 83.2
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.5e-174 615.5 355 82.8
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.8e-173 612.1 361 80.9
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 3.6e-173 611.7 361 81.4
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 8.0e-173 610.5 359 80.8
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 8.0e-173 610.5 357 82.4
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.8e-172 609.4 359 81.6
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 2.3e-172 609.0 360 81.7
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.5e-171 606.3 358 81.8
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.0e-171 605.9 355 81.4
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.6e-171 605.5 355 81.4
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 4.4e-171 604.7 361 80.9
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 5.8e-171 604.4 366 79.2
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.9e-170 602.1 359 81.6
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.9e-170 602.1 359 81.6
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.9e-170 602.1 357 79.8
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.9e-170 602.1 353 81.9
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 8.3e-170 600.5 359 78.6
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.9e-169 599.4 357 81.2
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 2.4e-169 599.0 354 81.6
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.2e-169 598.6 359 80.5
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 5.4e-169 597.8 359 81.1
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 7.1e-169 597.4 355 81.4
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.2e-169 597.0 355 79.4
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.2e-168 596.7 355 80.6
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.1e-168 595.9 386 76.7
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 2.7e-168 595.5 364 79.9
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.6e-168 594.7 362 78.7
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 6.0e-168 594.3 360 78.9
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.0e-167 593.6 355 79.4
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.0e-167 593.6 355 79.4
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.7e-167 592.8 355 79.4
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.9e-167 591.7 355 79.2
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 8.6e-167 590.5 360 80.8
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.5e-166 589.7 354 79.9
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.5e-166 589.7 355 78.6
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.5e-166 589.7 355 80.0
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.9e-166 589.3 350 80.9
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.3e-166 588.2 354 79.7
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 5.6e-166 587.8 360 80.8
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 7.3e-166 587.4 356 79.2
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.6e-165 586.3 358 79.6
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.6e-165 586.3 355 80.0
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 2.1e-165 585.9 360 78.3
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 2.1e-165 585.9 358 79.1
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 3.6e-165 585.1 451 66.1
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 4.7e-165 584.7 361 77.8
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.2e-165 584.3 355 78.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 6.2e-165 584.3 355 79.4
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 8.1e-165 583.9 364 78.8
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.8e-164 582.8 356 78.9
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 4.0e-164 581.6 357 78.4
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 6.8e-164 580.9 357 78.4
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 6.8e-164 580.9 358 79.1
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 8.9e-164 580.5 360 78.3
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.2e-163 580.1 364 76.4
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.5e-163 579.7 358 78.5
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.5e-163 579.7 354 78.5
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 4.4e-163 578.2 354 78.2
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.3e-162 576.6 346 78.6
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.9e-162 575.5 355 78.0
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 2.9e-162 575.5 354 78.2
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 3.7e-162 575.1 354 77.4
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 4.9e-162 574.7 354 78.8
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 6.4e-162 574.3 354 75.7
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 8.3e-162 573.9 386 72.0
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.1e-161 573.5 364 75.5
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 3.2e-161 572.0 354 78.5
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 7.1e-161 570.9 354 78.5
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 2.1e-160 569.3 354 76.8
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 2.1e-160 569.3 354 77.4
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 2.1e-160 569.3 354 77.4
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.7e-160 568.9 353 76.5
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.7e-160 568.9 413 70.2
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.5e-160 568.5 354 77.1
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.6e-160 568.2 362 74.9
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.0e-160 567.8 362 74.6
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.0e-160 567.8 362 74.6
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 7.8e-160 567.4 355 77.2
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 7.8e-160 567.4 364 73.4
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 7.8e-160 567.4 354 76.6
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 3.0e-159 565.5 354 77.1
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 3.0e-159 565.5 354 76.0
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.1e-158 563.5 354 76.8
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.3e-158 561.6 354 76.8
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 4.3e-158 561.6 354 76.0
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.6e-158 561.2 354 75.7
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.1e-156 557.0 435 66.9
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.0e-156 555.1 447 63.1
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.6e-155 552.4 330 80.0
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.7e-154 549.7 364 73.1
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.9e-154 548.9 352 75.0
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.3e-146 523.5 371 67.4
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.9e-146 521.5 356 68.5
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 7.1e-145 517.7 350 71.1
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.6e-144 516.5 356 68.5
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.1e-144 516.2 357 67.8
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.9e-144 514.2 359 67.7
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 2.5e-142 509.2 357 66.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 6.2e-141 504.6 360 66.9
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.1e-140 503.8 386 67.9
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 2.4e-140 502.7 355 66.2
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 4.0e-140 501.9 360 65.8
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 2.9e-138 495.7 353 65.2
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 4.2e-137 491.9 361 64.3
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 6.0e-136 488.0 355 63.7
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.3e-135 486.1 519 51.8
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.2e-131 473.8 271 84.1
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.9e-122 442.6 384 56.0
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 2.5e-121 439.5 270 77.8
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.0e-119 434.1 252 82.1
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.7e-117 425.6 273 75.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 2.4e-116 422.9 345 64.9
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 9.4e-105 384.4 345 54.2
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.6e-104 383.6 345 56.5
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.2e-99 367.5 377 49.6
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.2e-97 359.4 241 68.5
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.3e-87 326.6 197 77.2
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 8.5e-82 308.1 223 65.9
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 8.0e-80 301.6 269 59.1
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.3e-73 279.6 160 84.4
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 4.3e-73 279.3 162 82.1
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-71 273.9 177 76.3
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.5e-70 270.8 176 72.2
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 3.4e-70 269.6 181 70.2
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.3e-65 252.7 354 41.5
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 6.2e-56 222.2 174 59.2
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.2e-53 213.8 118 86.4
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.4e-44 184.5 168 59.5
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.3e-42 177.2 106 77.4
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.6e-35 154.5 106 74.5
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.3e-34 151.4 90 81.1
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 5.3e-31 139.4 88 77.3
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 4.3e-25 119.8 177 40.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 2.4e-20 104.0 77 64.9
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.7e-19 100.5 232 30.6
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 6.0e-19 99.4 112 51.8
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 9.6e-17 92.0 55 72.7
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.8e-16 89.7 62 64.5
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.4e-15 87.4 83 56.6
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 8.4e-13 79.0 68 63.2
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.4e-12 78.2 47 72.3
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 5.3e-07 59.7 59 45.8
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 2.6e-06 57.4 32 81.2
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 1.0e-05 55.5 43 53.5


User provided reference genes

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