Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 9.0e-136 486.9 239 100.0
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 4.1e-64 248.8 242 55.4
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 2.3e-59 233.0 247 55.9
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 5.8e-58 228.4 246 52.4
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.1e-51 207.6 238 50.4
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.0e-51 205.7 245 49.8
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.2e-50 204.1 245 49.0
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 3.4e-50 202.6 240 50.4
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 9.9e-50 201.1 252 46.8
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 2.2e-49 199.9 243 44.9
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.8e-49 199.1 242 47.5
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 4.9e-49 198.7 247 47.0
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 6.4e-49 198.4 248 46.4
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.2e-47 194.1 244 47.5
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.2e-47 194.1 244 46.3
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.1e-47 193.4 246 45.9
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 6.0e-47 191.8 249 45.4
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.3e-46 190.7 248 45.6
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 5.1e-46 188.7 242 47.9
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 2.8e-44 183.0 260 43.1
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 3.6e-44 182.6 263 42.6
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 4.7e-44 182.2 255 43.5
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 6.2e-44 181.8 247 43.3
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.1e-43 181.0 244 46.7
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.4e-43 180.6 244 44.7
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 3.1e-43 179.5 238 46.6
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 5.2e-43 178.7 246 44.3
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 2.6e-42 176.4 270 45.6
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 4.4e-42 175.6 246 45.5
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 7.6e-42 174.9 239 44.4
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 7.6e-42 174.9 243 42.8
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 7.6e-42 174.9 252 43.3
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 2.2e-41 173.3 242 44.2
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-40 171.0 242 40.9
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.1e-40 171.0 240 45.4
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.2e-40 169.5 245 42.4
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 3.2e-40 169.5 266 43.6
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.6e-39 167.2 241 43.2
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.7e-38 163.7 248 42.3
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.7e-38 163.7 248 41.5
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.3e-38 163.3 250 42.0
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 6.6e-38 161.8 247 44.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 1.1e-37 161.0 187 52.4
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 2.5e-37 159.8 266 41.4
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 7.3e-37 158.3 259 41.7
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 7.3e-37 158.3 239 43.1
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 7.3e-37 158.3 261 41.4
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 9.6e-37 157.9 237 40.5
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 9.6e-37 157.9 243 44.0
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.3e-36 157.5 239 43.1
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.3e-36 157.5 248 38.3
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 1.6e-36 157.1 253 41.9
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.4e-35 154.1 242 40.1
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.1e-35 152.9 239 42.7
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.0e-35 152.5 237 42.2
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.5e-34 150.6 238 40.3
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 1.5e-34 150.6 241 41.5
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 2.6e-34 149.8 243 40.3
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 3.4e-34 149.4 240 42.9
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 9.9e-34 147.9 239 42.7
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.3e-33 147.5 249 40.6
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.3e-33 147.5 242 41.7
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 2.2e-33 146.7 254 39.8
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.9e-33 146.4 247 42.5
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 6.4e-33 145.2 235 40.4
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 8.4e-33 144.8 257 40.1
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 1.4e-32 144.1 223 45.7
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.4e-32 144.1 233 41.2
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 3.2e-32 142.9 238 39.1
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 5.4e-32 142.1 240 40.8
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 9.3e-32 141.4 240 40.8
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.2e-31 141.0 223 41.3
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.2e-31 141.0 240 40.8
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 2.1e-31 140.2 249 39.8
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 2.7e-31 139.8 235 40.9
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.0e-30 137.9 228 38.2
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 5.1e-30 135.6 246 37.0
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.5e-29 134.0 249 38.6
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 2.5e-29 133.3 242 38.8
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 3.3e-29 132.9 222 42.3
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.3e-29 132.9 247 38.5
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 9.6e-29 131.3 242 39.3
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.6e-28 130.6 238 36.6
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 3.7e-28 129.4 252 36.5
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.4e-27 127.5 235 37.4
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 5.3e-27 125.6 250 36.8
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 9.0e-27 124.8 234 37.6
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.2e-26 124.4 252 38.1
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 3.4e-26 122.9 254 38.2
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 1.7e-25 120.6 247 38.1
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 3.8e-25 119.4 255 37.3
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 4.9e-25 119.0 247 41.3
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 4.9e-25 119.0 239 38.9
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 4.9e-25 119.0 235 35.7
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 4.2e-24 115.9 246 37.0
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 7.1e-24 115.2 243 35.4
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 9.3e-24 114.8 249 36.9
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 2.7e-23 113.2 237 37.6
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 2.7e-23 113.2 248 35.1
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 4.6e-23 112.5 258 36.8
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 6.7e-22 108.6 238 35.7
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 1.5e-21 107.5 250 36.4
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.5e-21 106.7 200 37.0
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.3e-20 104.4 238 35.3
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 3.7e-20 102.8 241 34.9
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 6.2e-20 102.1 234 35.5
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 8.2e-20 101.7 243 35.8
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.1e-19 101.3 252 35.7
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.4e-19 100.9 234 35.0
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.8e-19 100.5 256 32.0
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 4.0e-19 99.4 236 33.9
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 4.5e-18 95.9 248 33.1
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 7.6e-18 95.1 239 33.9
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 2.9e-17 93.2 239 33.1
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 8.4e-17 91.7 247 33.6
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 1.1e-16 91.3 244 30.3
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 3.2e-16 89.7 242 33.5
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.6e-15 87.4 260 30.4
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 1.0e-14 84.7 146 37.7
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.9e-14 82.8 235 31.5
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-13 81.3 129 38.8
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.5e-13 80.1 235 29.4
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 5.7e-13 79.0 108 41.7
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 7.4e-13 78.6 124 39.5
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 9.7e-13 78.2 125 38.4
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 1.3e-12 77.8 253 29.6
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.2e-12 77.0 224 29.9
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 2.2e-12 77.0 94 55.3
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 3.7e-12 76.3 146 35.6
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 4.8e-12 75.9 239 28.9
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 4.8e-12 75.9 241 29.9
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 6.3e-12 75.5 218 29.4
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 2.4e-11 73.6 240 29.6
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 2.4e-11 73.6 240 29.6
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 2.4e-11 73.6 240 29.6
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 4.1e-11 72.8 93 44.1
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 1.5e-10 70.9 240 28.3
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 2.0e-10 70.5 177 28.8
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 1.3e-09 67.8 243 28.8
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.8e-09 66.2 181 29.8
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 8.5e-09 65.1 240 27.1
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-07 60.5 91 37.4
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-07 60.5 90 41.1
Zm00001eb317110 Zea mays HOM05D043331 ORTHO05D049882 6.1e-07 58.9 232 29.3
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 3.0e-06 56.6 94 42.6


User provided reference genes

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