Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 9.3e-156 553.5 284 100.0
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 1.3e-85 320.5 288 64.6
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 4.3e-84 315.5 291 62.9
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 2.6e-81 306.2 293 59.7
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.7e-80 303.5 295 59.0
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 4.9e-80 302.0 299 59.2
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 1.6e-78 297.0 285 60.4
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 2.5e-76 289.7 285 57.9
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 3.1e-74 282.7 292 56.5
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.2e-73 280.8 302 54.6
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 7.6e-73 278.1 286 56.6
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 9.9e-73 277.7 291 56.4
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.7e-72 275.8 288 55.9
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 3.7e-72 275.8 288 55.9
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 3.7e-72 275.8 288 58.0
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 4.9e-72 275.4 255 60.4
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 6.4e-72 275.0 286 55.9
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 8.4e-72 274.6 281 56.6
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 7.1e-71 271.6 289 57.8
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 3.5e-70 269.2 295 53.9
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 4.6e-70 268.9 291 54.6
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 4.6e-70 268.9 295 54.2
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 4.6e-70 268.9 289 57.1
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 6.0e-70 268.5 297 53.2
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 7.8e-70 268.1 298 53.7
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 1.0e-69 267.7 291 54.3
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 2.3e-69 266.5 272 55.9
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 3.0e-69 266.2 293 55.3
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 3.9e-69 265.8 240 62.1
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 3.9e-69 265.8 289 56.7
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 1.1e-68 264.2 295 53.2
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 1.1e-68 264.2 296 54.7
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 7.3e-68 261.5 301 54.8
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 7.3e-68 261.5 301 54.8
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 9.6e-68 261.2 293 51.2
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 2.1e-67 260.0 263 57.0
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 3.6e-67 259.2 294 54.1
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 4.7e-67 258.8 241 60.2
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 2.4e-66 256.5 293 51.9
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 8.9e-66 254.6 298 53.4
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 1.5e-65 253.8 209 65.1
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.0e-65 253.4 300 52.0
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 2.6e-65 253.1 209 65.1
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 2.6e-65 253.1 303 52.5
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 4.4e-65 252.3 310 48.4
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 7.6e-65 251.5 300 50.3
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.2e-64 250.0 286 51.4
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.9e-64 249.6 231 58.9
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 4.9e-64 248.8 301 51.2
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 2.4e-63 246.5 290 55.2
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 3.2e-63 246.1 274 54.0
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 5.4e-63 245.4 267 54.3
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 7.1e-63 245.0 247 55.1
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 1.2e-62 244.2 293 53.6
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 1.6e-62 243.8 298 49.0
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.6e-62 243.8 300 50.7
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 2.7e-62 243.0 231 57.6
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 3.5e-62 242.7 304 52.3
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 4.6e-62 242.3 234 56.4
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 6.0e-62 241.9 292 51.0
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 6.0e-62 241.9 299 50.8
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 6.0e-62 241.9 353 46.5
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 7.8e-62 241.5 309 50.2
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 5.1e-61 238.8 292 51.7
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 6.6e-61 238.4 296 50.3
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 6.6e-61 238.4 259 54.4
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 1.1e-60 237.7 239 54.8
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 1.9e-60 236.9 288 50.3
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.9e-60 236.9 294 50.7
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.5e-60 236.5 301 47.2
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 3.3e-60 236.1 289 49.1
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 7.3e-60 235.0 237 57.0
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 1.3e-59 234.2 293 51.5
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 1.6e-59 233.8 213 59.2
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 1.6e-59 233.8 213 59.2
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 1.6e-59 233.8 213 59.2
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 2.1e-59 233.4 241 56.4
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 3.6e-59 232.6 298 50.7
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 3.6e-59 232.6 297 50.8
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 3.6e-59 232.6 236 56.4
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 4.8e-59 232.3 305 50.2
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 6.2e-59 231.9 228 57.5
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 8.1e-59 231.5 224 57.6
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 8.1e-59 231.5 214 59.3
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.4e-58 230.7 292 46.6
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.8e-58 230.3 293 50.9
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 2.4e-58 229.9 290 48.6
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 3.1e-58 229.6 207 58.9
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 4.0e-58 229.2 290 48.6
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 5.3e-58 228.8 272 52.6
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 5.3e-58 228.8 237 56.5
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.3e-58 228.8 291 48.5
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 9.0e-58 228.0 230 56.1
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 9.0e-58 228.0 289 48.1
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 9.0e-58 228.0 293 49.5
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 5.8e-57 225.3 167 71.9
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 7.6e-57 224.9 283 48.8
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 1.3e-56 224.2 254 51.6
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 1.3e-56 224.2 300 49.3
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 2.2e-56 223.4 274 51.5
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 8.4e-56 221.5 291 47.1
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.4e-55 220.7 294 46.9
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.4e-55 220.7 294 46.9
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 4.2e-55 219.2 188 63.3
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 7.1e-55 218.4 196 58.7
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 1.6e-54 217.2 291 47.8
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 1.3e-53 214.2 242 52.5
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 1.7e-53 213.8 307 44.0
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 1.7e-53 213.8 296 44.6
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.3e-52 209.5 240 50.0
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 3.6e-51 206.1 217 55.3
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 1.8e-50 203.8 187 62.0
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 5.3e-50 202.2 281 45.9
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 1.5e-49 200.7 305 43.6
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 5.8e-49 198.7 302 43.7
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 5.8e-49 198.7 250 51.6
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 4.9e-48 195.7 214 53.3
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.6e-46 190.7 230 50.0
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 3.9e-45 186.0 203 53.2
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.1e-43 180.3 211 49.8
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 1.8e-42 177.2 203 48.3
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 6.5e-40 168.7 153 60.1
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 1.4e-39 167.5 286 39.2
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 4.6e-38 162.5 232 43.5
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 6.0e-38 162.2 183 48.6
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 3.0e-37 159.8 238 43.3
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 7.4e-36 155.2 201 46.8
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 4.8e-35 152.5 102 75.5
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.7e-32 144.1 129 59.7
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 2.2e-32 143.7 103 71.8
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 1.1e-31 141.4 125 61.6
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 1.1e-31 141.4 223 38.6
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.6e-30 137.5 192 50.5
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 1.8e-29 134.0 196 40.8
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.0e-24 118.2 189 37.6
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.4e-23 114.4 153 51.6
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 5.5e-23 112.5 98 58.2
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 9.4e-23 111.7 168 43.5
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.6e-22 110.9 85 69.4
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 1.2e-17 94.7 133 39.1
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 7.7e-17 92.0 81 60.5
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 1.3e-16 91.3 119 45.4
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 6.5e-16 89.0 162 32.1
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 8.5e-16 88.6 169 32.0
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 2.3e-13 80.5 76 59.2
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 6.7e-13 79.0 81 56.8
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 6.3e-11 72.4 84 51.2
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 3.1e-10 70.1 81 53.1
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 2.6e-09 67.0 80 47.5
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 8.5e-08 62.0 46 65.2
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 8.5e-08 62.0 46 65.2
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 1.1e-07 61.6 33 87.9
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 5.5e-07 59.3 44 65.9


User provided reference genes

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