Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold63G21753 Striga asiatica HOM05D013352 ORTHO05D013588 2.8e-138 496.5 598 100.0
SGA_v2.0_scaffold63G21748 Striga asiatica HOM05D000029 ORTHO05D013588 8.8e-39 166.0 493 60.4
SGA_v2.0_scaffold169G38665 Striga asiatica HOM05D000029 ORTHO05D001072 8.3e-29 132.9 99 72.7
Migut.E01540 Erythranthe guttata HOM05D000029 ORTHO05D001072 1.2e-19 102.4 97 54.6
SGA_v2.0_scaffold169G38663 Striga asiatica HOM05D000029 ORTHO05D001072 1.1e-17 95.9 94 54.3
MSTRG.1665 Avicennia marina HOM05D000029 ORTHO05D001072 2.3e-15 88.2 99 49.5
Oeu006964.1 Olea europaea HOM05D000029 ORTHO05D001072 2.0e-14 85.1 90 50.0
SalBow1G0246 Salvia bowleyana HOM05D000029 ORTHO05D001072 9.8e-14 82.8 99 45.5
Lj7C697T11 Lonicera japonica HOM05D000029 ORTHO05D001072 2.9e-13 81.3 94 50.0
Cc08_g09940 Coffea canephora HOM05D000029 ORTHO05D001072 3.7e-13 80.9 94 48.9
Hma1.2p1_0049F.1_g028290 Hydrangea macrophylla HOM05D000029 ORTHO05D001072 1.1e-12 79.3 94 45.7
Rhsim01G0085800 Rhododendron simsii HOM05D000029 ORTHO05D001072 9.2e-12 76.3 95 49.5
Lsat_1_v5_gn_6_8820 Lactuca sativa HOM05D000029 ORTHO05D001072 2.7e-11 74.7 78 42.3
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 6.0e-11 73.6 94 42.6
Dinv27933 Davidia involucrata HOM05D000029 ORTHO05D001072 7.8e-11 73.2 82 46.3
Carub.0006s2367 Capsella rubella HOM05D000029 ORTHO05D001072 1.0e-10 72.8 280 48.2
Rhsim01G0056700 Rhododendron simsii HOM05D000029 ORTHO05D001072 1.3e-10 72.4 95 47.4
Rhsim01G0086600 Rhododendron simsii HOM05D000029 ORTHO05D001072 1.3e-10 72.4 95 46.3
RhsimUnG0233200 Rhododendron simsii HOM05D000029 ORTHO05D001072 1.3e-10 72.4 95 46.3
RhsimUnG0155800 Rhododendron simsii HOM05D000029 ORTHO05D001072 1.7e-10 72.0 95 46.3
SGA_v2.0_scaffold163G38056 Striga asiatica HOM05D000029 ORTHO05D001072 1.7e-10 72.0 89 48.3
vmacro00184 Vaccinium macrocarpon HOM05D000029 ORTHO05D001072 3.0e-10 71.2 94 43.6
Rhsim01G0056100 Rhododendron simsii HOM05D000029 ORTHO05D001072 3.9e-10 70.9 95 46.3
Haze_21923 Corylus avellana HOM05D000029 ORTHO05D001072 5.0e-10 70.5 94 43.6
HanXRQChr07g0206001 Helianthus annuus HOM05D000029 ORTHO05D001072 6.6e-10 70.1 92 40.2
Nitab4.5_0005618g0010 Nicotiana tabacum HOM05D000029 ORTHO05D001072 6.6e-10 70.1 77 46.8
Peaxi162Scf00699g00413 Petunia axillaris HOM05D000029 ORTHO05D001072 6.6e-10 70.1 82 45.1
PGSC0003DMG400007634 Solanum tuberosum HOM05D000029 ORTHO05D001072 6.6e-10 70.1 81 46.9
Atru.chr7.2052 Acer truncatum HOM05D000029 ORTHO05D001072 8.6e-10 69.7 91 46.2
Rhsim11G0050500 Rhododendron simsii HOM05D000029 ORTHO05D001072 8.6e-10 69.7 80 45.0
TWI34G0455 Tripterygium wilfordii HOM05D000029 ORTHO05D001072 1.5e-09 68.9 87 44.8
Rhsim01G0142900 Rhododendron simsii HOM05D000029 ORTHO05D001072 1.9e-09 68.6 80 45.0
Rhsim11G0050600 Rhododendron simsii HOM05D000029 ORTHO05D001072 1.9e-09 68.6 80 45.0
GSVIVG01035313001 Vitis vinifera HOM05D000029 ORTHO05D001072 2.5e-09 68.2 94 45.7
Rhsim11G0049700 Rhododendron simsii HOM05D000029 ORTHO05D001072 3.3e-09 67.8 94 40.4
AUR62040223 Chenopodium quinoa HOM05D000029 ORTHO05D001072 4.3e-09 67.4 79 40.5
Rhsim01G0075000 Rhododendron simsii HOM05D000029 ORTHO05D001072 4.3e-09 67.4 73 49.3
CiPaw.08G027200 Carya illinoinensis HOM05D000029 ORTHO05D001072 5.6e-09 67.0 94 41.5
QL12p040931 Quercus lobata HOM05D000029 ORTHO05D001072 7.3e-09 66.6 94 42.6
SHI47023 Sapria himalayana HOM05D013352 ORTHO05D013588 7.3e-09 66.6 158 39.2
SHI50356 Sapria himalayana HOM05D013352 ORTHO05D013588 7.3e-09 66.6 158 39.2
TAR383G0513 Trochodendron aralioides HOM05D000029 ORTHO05D001072 7.3e-09 66.6 94 44.7
EL10Ac2g03974 Beta vulgaris HOM05D000029 ORTHO05D001072 9.5e-09 66.2 94 40.4
EL10Ac2g03975 Beta vulgaris HOM05D000029 ORTHO05D001072 9.5e-09 66.2 94 40.4
AUR62009227 Chenopodium quinoa HOM05D000029 ORTHO05D001072 9.5e-09 66.2 94 40.4
Nitab4.5_0000318g0160 Nicotiana tabacum HOM05D000029 ORTHO05D001072 9.5e-09 66.2 81 43.2
Rhsim01G0083700 Rhododendron simsii HOM05D000029 ORTHO05D001072 9.5e-09 66.2 72 44.4
Rhsim11G0050300 Rhododendron simsii HOM05D000029 ORTHO05D001072 1.2e-08 65.9 85 43.5
CAN.G20.15 Capsicum annuum HOM05D000029 ORTHO05D001072 1.6e-08 65.5 81 43.2
AUR62009224 Chenopodium quinoa HOM05D000029 ORTHO05D001072 1.6e-08 65.5 66 42.4
Cc06_g10520 Coffea canephora HOM05D000029 ORTHO05D001072 1.6e-08 65.5 86 43.0
PGR044G1126 Punica granatum HOM05D000029 ORTHO05D001072 1.6e-08 65.5 89 37.1
DCAR_003078 Daucus carota HOM05D000029 ORTHO05D001072 2.1e-08 65.1 94 43.6
Oeu018572.1 Olea europaea HOM05D000029 ORTHO05D001072 2.1e-08 65.1 90 37.8
Ah.10g034810 Amaranthus hybridus HOM05D000029 ORTHO05D001072 2.8e-08 64.7 94 38.3
AT5G25910 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 2.8e-08 64.7 82 43.9
ClCG08G012090 Citrullus lanatus HOM05D000029 ORTHO05D001072 4.7e-08 63.9 91 44.0
COL.COLO4_19954 Corchorus olitorius HOM05D000029 ORTHO05D001072 4.7e-08 63.9 90 42.2
Rhsim11G0050000 Rhododendron simsii HOM05D000029 ORTHO05D001072 4.7e-08 63.9 80 42.5
Rhsim11G0050100 Rhododendron simsii HOM05D000029 ORTHO05D001072 4.7e-08 63.9 80 42.5
HanXRQChr09g0257661 Helianthus annuus HOM05D000029 ORTHO05D001072 6.2e-08 63.5 79 43.0
Lsat_1_v5_gn_8_98420 Lactuca sativa HOM05D000029 ORTHO05D001072 8.0e-08 63.2 78 42.3
Hund19494 Selenicereus undatus HOM05D000029 ORTHO05D001072 8.0e-08 63.2 95 40.0
C02p59250 Brassica napus HOM05D000029 ORTHO05D001072 1.1e-07 62.8 84 45.2
Carub.0006s2366 Capsella rubella HOM05D000053 ORTHO05D000035 1.1e-07 62.8 268 47.4
DCAR_000765 Daucus carota HOM05D000029 ORTHO05D001072 1.1e-07 62.8 73 41.1
Solyc08g066210.3 Solanum lycopersicum HOM05D000029 ORTHO05D001072 1.1e-07 62.8 81 44.4
CARHR187510 Cardamine hirsuta HOM05D000029 ORTHO05D001072 1.4e-07 62.4 94 43.6
AL6G37870 Arabidopsis lyrata HOM05D000029 ORTHO05D001072 1.8e-07 62.0 94 42.6
Gohir.D05G046900 Gossypium hirsutum HOM05D000029 ORTHO05D001072 1.8e-07 62.0 86 41.9
Gorai.009G048200 Gossypium raimondii HOM05D000029 ORTHO05D001072 1.8e-07 62.0 86 41.9
Lsat_1_v5_gn_3_109121 Lactuca sativa HOM05D000029 ORTHO05D001072 1.8e-07 62.0 64 39.1
Os01g0742400 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D001072 1.8e-07 62.0 66 42.4
Sopen08g019890 Solanum pennellii HOM05D000029 ORTHO05D001072 1.8e-07 62.0 81 44.4
Atru.chr2.3395 Acer truncatum HOM05D000071 ORTHO05D000029 2.3e-07 61.6 157 28.7
Dinv27931 Davidia involucrata HOM05D000029 ORTHO05D001072 2.3e-07 61.6 78 46.2
Gohir.A07G022237 Gossypium hirsutum HOM05D000029 ORTHO05D001072 2.3e-07 61.6 84 39.3
SalBow1G1615 Salvia bowleyana HOM05D000029 ORTHO05D001072 2.3e-07 61.6 84 44.0
Aa31LG11G4940 Aethionema arabicum HOM05D000029 ORTHO05D001072 3.1e-07 61.2 94 42.6
AT5G25930 Arabidopsis thaliana HOM05D000029 ORTHO05D001072 3.1e-07 61.2 94 41.5
CiPaw.04G156100 Carya illinoinensis HOM05D000029 ORTHO05D001072 3.1e-07 61.2 91 41.8
MELO3C011127.2 Cucumis melo HOM05D000029 ORTHO05D001072 3.1e-07 61.2 87 42.5
Thhalv10003585m.g Eutrema salsugineum HOM05D000029 ORTHO05D001072 3.1e-07 61.2 268 45.5
HanXRQChr03g0077951 Helianthus annuus HOM05D000029 ORTHO05D001072 4.0e-07 60.8 78 41.0
HanXRQChr13g0409641 Helianthus annuus HOM05D000029 ORTHO05D001072 4.0e-07 60.8 60 41.7
Lsat_1_v5_gn_8_98240 Lactuca sativa HOM05D000029 ORTHO05D001072 4.0e-07 60.8 81 42.0
Nitab4.5_0000664g0060 Nicotiana tabacum HOM05D000029 ORTHO05D001072 4.0e-07 60.8 72 45.8
TAR383G1083 Trochodendron aralioides HOM05D000029 ORTHO05D001072 4.0e-07 60.8 90 42.2
A02p39530 Brassica napus HOM05D000029 ORTHO05D001072 6.8e-07 60.1 84 44.0
BraA02t08919Z Brassica rapa HOM05D000029 ORTHO05D001072 6.8e-07 60.1 84 44.0
Cc06_g10500 Coffea canephora HOM05D000029 ORTHO05D001072 6.8e-07 60.1 86 40.7
Duzib168G1136 Durio zibethinus HOM05D000029 ORTHO05D001072 6.8e-07 60.1 82 41.5
THA.LOC104811260 Tarenaya hassleriana HOM05D000029 ORTHO05D001072 6.8e-07 60.1 94 43.6
C07p42000 Brassica napus HOM05D000029 ORTHO05D001072 8.9e-07 59.7 73 47.9
Gohir.D07G024900 Gossypium hirsutum HOM05D000029 ORTHO05D001072 8.9e-07 59.7 84 38.1
HanXRQChr12g0358121 Helianthus annuus HOM05D000029 ORTHO05D001072 8.9e-07 59.7 79 43.0
MD08G1110500 Malus domestica HOM05D000029 ORTHO05D001072 8.9e-07 59.7 94 38.3
Ah.10g034800 Amaranthus hybridus HOM05D000029 ORTHO05D001072 1.2e-06 59.3 94 31.9
CSS0002126 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D001072 1.2e-06 59.3 90 40.0
Gohir.A06G091400 Gossypium hirsutum HOM05D000029 ORTHO05D001072 1.2e-06 59.3 82 42.7
HanXRQChr16g0507851 Helianthus annuus HOM05D000029 ORTHO05D001072 1.2e-06 59.3 81 43.2
Lsat_1_v5_gn_6_7801 Lactuca sativa HOM05D000029 ORTHO05D001072 1.2e-06 59.3 77 32.5
BolC2t11987H Brassica oleracea HOM05D000029 ORTHO05D001072 1.5e-06 58.9 84 44.0
Gorai.001G026000 Gossypium raimondii HOM05D000029 ORTHO05D001072 1.5e-06 58.9 84 38.1
Lsat_1_v5_gn_6_7820 Lactuca sativa HOM05D000029 ORTHO05D001072 1.5e-06 58.9 90 32.2
Oeu015770.1 Olea europaea HOM05D000029 ORTHO05D001072 1.5e-06 58.9 77 39.0
AL6G37850 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 2.0e-06 58.5 94 40.4
C07p41990 Brassica napus HOM05D000029 ORTHO05D001072 2.0e-06 58.5 94 42.6
Migut.A00181 Erythranthe guttata HOM05D000029 ORTHO05D001072 2.0e-06 58.5 82 37.8
Lj4A384G20 Lonicera japonica HOM05D000029 ORTHO05D001072 2.0e-06 58.5 83 37.3
Manes.16G073300 Manihot esculenta HOM05D000029 ORTHO05D001072 2.6e-06 58.2 94 41.5
Sed0006304 Sechium edule HOM05D000029 ORTHO05D001072 2.6e-06 58.2 91 40.7
BcaB07g29977 Brassica carinata HOM05D000029 ORTHO05D001072 3.4e-06 57.8 77 45.5
Cfa013386 Carpinus fangiana HOM05D000029 ORTHO05D001072 3.4e-06 57.8 99 39.4
HanXRQChr12g0358101 Helianthus annuus HOM05D000029 ORTHO05D001072 4.4e-06 57.4 90 35.6
Lj4A382G43 Lonicera japonica HOM05D000029 ORTHO05D001072 4.4e-06 57.4 86 36.0
Potri.006G235500 Populus trichocarpa HOM05D000029 ORTHO05D001072 4.4e-06 57.4 88 35.2
QL12p040963 Quercus lobata HOM05D000029 ORTHO05D001072 4.4e-06 57.4 95 38.9
TAR624G0969 Trochodendron aralioides HOM05D000029 ORTHO05D001072 4.4e-06 57.4 88 38.6
GSVIVG01035312001 Vitis vinifera HOM05D000029 ORTHO05D001072 4.4e-06 57.4 68 47.1
BcaNung04548 Brassica carinata HOM05D000029 ORTHO05D001072 5.8e-06 57.0 75 45.3
CSS0027976 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D001072 5.8e-06 57.0 95 35.8
Migut.K00544 Erythranthe guttata HOM05D000029 ORTHO05D001072 5.8e-06 57.0 89 37.1
Gohir.D06G090700 Gossypium hirsutum HOM05D000029 ORTHO05D001072 5.8e-06 57.0 82 41.5
Gorai.010G104300 Gossypium raimondii HOM05D000029 ORTHO05D001072 5.8e-06 57.0 82 41.5
SGA_v2.0_scaffold512G52634 Striga asiatica HOM05D000029 ORTHO05D001072 5.8e-06 57.0 88 36.4
Dinv42248 Davidia involucrata HOM05D000029 ORTHO05D001072 7.5e-06 56.6 88 40.9
HanXRQChr16g0507841 Helianthus annuus HOM05D000029 ORTHO05D001072 7.5e-06 56.6 91 42.9
Potri.018G057100 Populus trichocarpa HOM05D000029 ORTHO05D001072 7.5e-06 56.6 94 36.2
Prupe.1G444700 Prunus persica HOM05D000029 ORTHO05D001072 7.5e-06 56.6 81 37.0
Ah.10g034790 Amaranthus hybridus HOM05D000029 ORTHO05D001072 9.8e-06 56.2 59 40.7
CARHR039350 Cardamine hirsuta HOM05D000053 ORTHO05D000035 9.8e-06 56.2 94 38.3
CiPaw.04G156700 Carya illinoinensis HOM05D000029 ORTHO05D001072 9.8e-06 56.2 91 38.5
FvH4_2g35260 Fragaria vesca HOM05D000029 ORTHO05D001072 9.8e-06 56.2 84 40.5
Lj4A381T23 Lonicera japonica HOM05D000029 ORTHO05D001072 9.8e-06 56.2 94 38.3
HPP92_008713 Vanilla planifolia HOM05D000029 ORTHO05D001072 9.8e-06 56.2 66 40.9
GSVIVG01015298001 Vitis vinifera HOM05D000029 ORTHO05D001072 9.8e-06 56.2 76 40.8


User provided reference genes

Program Settings