Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold63G21659 Striga asiatica HOM05D002034 ORTHO05D004251 9.4e-59 229.9 113 100.0
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.9e-12 75.1 37 86.5
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 3.9e-12 75.1 37 86.5
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 6.6e-12 74.3 37 86.5
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 1.1e-11 73.6 37 83.8
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 1.5e-11 73.2 64 59.4
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 2.5e-11 72.4 37 86.5
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 2.5e-11 72.4 37 86.5
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 3.3e-11 72.0 38 84.2
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 3.3e-11 72.0 65 53.8
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 5.6e-11 71.2 46 71.7
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 5.6e-11 71.2 37 83.8
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 5.6e-11 71.2 37 83.8
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 7.3e-11 70.9 39 76.9
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 7.3e-11 70.9 40 75.0
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 7.3e-11 70.9 37 81.1
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 9.5e-11 70.5 35 85.7
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 9.5e-11 70.5 37 81.1
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 1.2e-10 70.1 37 81.1
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 1.6e-10 69.7 37 78.4
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 1.6e-10 69.7 37 78.4
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.6e-10 69.7 37 78.4
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 2.1e-10 69.3 37 78.4
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 2.1e-10 69.3 42 73.8
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.1e-10 69.3 38 78.9
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 2.1e-10 69.3 37 78.4
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 2.1e-10 69.3 37 81.1
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 2.1e-10 69.3 37 78.4
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 2.1e-10 69.3 37 81.1
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 2.8e-10 68.9 37 78.4
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 2.8e-10 68.9 36 83.3
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 2.8e-10 68.9 37 78.4
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 3.6e-10 68.6 37 75.7
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 3.6e-10 68.6 78 48.7
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 4.7e-10 68.2 36 83.3
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 4.7e-10 68.2 37 78.4
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 4.7e-10 68.2 37 75.7
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 4.7e-10 68.2 62 58.1
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 4.7e-10 68.2 37 75.7
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 4.7e-10 68.2 38 78.9
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 6.2e-10 67.8 37 75.7
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 6.2e-10 67.8 37 75.7
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 6.2e-10 67.8 37 75.7
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 8.1e-10 67.4 37 75.7
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 8.1e-10 67.4 37 73.0
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 8.1e-10 67.4 62 54.8
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 1.1e-09 67.0 37 78.4
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.1e-09 67.0 37 78.4
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.1e-09 67.0 37 78.4
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 1.1e-09 67.0 80 46.2
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 1.1e-09 67.0 37 75.7
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 1.4e-09 66.6 38 73.7
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 1.4e-09 66.6 37 78.4
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 1.8e-09 66.2 37 75.7
BcaB01g04519 Brassica carinata HOM05D002034 ORTHO05D004251 1.8e-09 66.2 39 69.2
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.8e-09 66.2 35 80.0
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.8e-09 66.2 35 80.0
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.8e-09 66.2 37 75.7
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.8e-09 66.2 37 75.7
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 1.8e-09 66.2 37 75.7
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 1.8e-09 66.2 35 80.0
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 2.3e-09 65.9 35 77.1
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 2.3e-09 65.9 35 82.9
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 2.3e-09 65.9 37 73.0
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 2.3e-09 65.9 35 82.9
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 3.1e-09 65.5 37 73.0
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 3.1e-09 65.5 37 73.0
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.1e-09 65.5 37 73.0
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 3.1e-09 65.5 37 73.0
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 3.1e-09 65.5 37 73.0
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 3.1e-09 65.5 37 73.0
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 3.1e-09 65.5 37 73.0
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 3.1e-09 65.5 37 73.0
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 4.0e-09 65.1 37 70.3
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 4.0e-09 65.1 37 70.3
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 4.0e-09 65.1 37 70.3
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 4.0e-09 65.1 37 70.3
Lalb_Chr15g0083121 Lupinus albus HOM05D002034 ORTHO05D004251 4.0e-09 65.1 37 67.6
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 4.0e-09 65.1 37 70.3
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 5.2e-09 64.7 37 70.3
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 5.2e-09 64.7 36 75.0
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 6.8e-09 64.3 35 74.3
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 6.8e-09 64.3 37 73.0
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 6.8e-09 64.3 37 73.0
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 6.8e-09 64.3 37 73.0
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 6.8e-09 64.3 37 73.0
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 1.2e-08 63.5 37 70.3
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 1.2e-08 63.5 37 70.3
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 1.5e-08 63.2 36 69.4
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.5e-08 63.2 36 69.4
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 2.0e-08 62.8 62 51.6
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 2.0e-08 62.8 62 51.6
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 2.6e-08 62.4 35 71.4
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.6e-08 62.4 35 71.4
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 2.6e-08 62.4 35 68.6
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 2.6e-08 62.4 35 80.0
VMungo0647G1991 Vigna mungo HOM05D002034 ORTHO05D004251 2.6e-08 62.4 41 63.4
C03p14280 Brassica napus HOM05D002034 ORTHO05D004251 3.4e-08 62.0 41 65.9
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 3.4e-08 62.0 41 65.9
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 4.4e-08 61.6 37 70.3
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 4.4e-08 61.6 37 73.0
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 5.8e-08 61.2 37 70.3
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 5.8e-08 61.2 37 70.3
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 1.3e-07 60.1 38 71.1
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.2e-07 59.3 39 66.7
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 2.9e-07 58.9 39 69.2
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 2.9e-07 58.9 63 50.8
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 1.1e-06 57.0 33 75.8
SEGI_39431 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 1.4e-06 56.6 42 59.5
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 3.2e-06 55.5 37 62.2


User provided reference genes

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