Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold638G53308 Striga asiatica HOM05D003927 ORTHO05D004905 4.6e-143 511.1 247 100.0
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 1.1e-128 463.4 281 82.2
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 1.9e-128 462.6 287 79.4
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 1.9e-128 462.6 285 80.7
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 3.2e-128 461.8 287 79.8
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 4.2e-128 461.5 287 79.8
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 9.3e-128 460.3 287 79.1
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 1.6e-127 459.5 285 79.3
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 1.6e-127 459.5 287 79.1
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 1.6e-127 459.5 287 78.4
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 1.6e-127 459.5 287 78.4
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.6e-127 459.5 287 78.7
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 2.1e-127 459.1 287 78.7
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 2.7e-127 458.8 287 79.1
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 4.6e-127 458.0 287 78.0
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 7.9e-127 457.2 282 80.9
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 7.9e-127 457.2 287 79.4
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 7.9e-127 457.2 287 79.4
FAN21G3157 Fragaria x ananassa HOM05D003927 ORTHO05D004905 7.9e-127 457.2 287 79.4
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 7.9e-127 457.2 287 79.4
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 1.0e-126 456.8 287 79.4
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 1.0e-126 456.8 287 78.0
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 1.3e-126 456.4 287 77.0
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 1.3e-126 456.4 287 77.4
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 2.3e-126 455.7 287 78.0
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 3.9e-126 454.9 287 78.0
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 3.9e-126 454.9 287 78.0
MBI18_g31367_MAGBIO Magnolia biondii HOM05D003927 ORTHO05D004905 5.1e-126 454.5 287 77.7
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 5.1e-126 454.5 286 78.3
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 5.1e-126 454.5 287 78.0
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 6.7e-126 454.1 287 77.4
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 8.7e-126 453.8 287 77.4
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 1.1e-125 453.4 287 77.7
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 1.5e-125 453.0 287 77.0
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 2.5e-125 452.2 287 77.0
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 2.5e-125 452.2 287 77.7
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 4.3e-125 451.4 287 77.0
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 4.3e-125 451.4 287 77.7
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 4.3e-125 451.4 287 76.7
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 4.3e-125 451.4 287 76.7
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 4.3e-125 451.4 287 76.7
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 7.4e-125 450.7 287 77.7
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 7.4e-125 450.7 287 77.7
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 7.4e-125 450.7 285 77.5
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 1.3e-124 449.9 287 76.7
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 1.6e-124 449.5 287 77.4
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 2.2e-124 449.1 287 77.0
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 2.2e-124 449.1 287 77.4
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 2.8e-124 448.7 287 77.4
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 3.7e-124 448.4 287 76.0
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 6.3e-124 447.6 287 75.6
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 6.3e-124 447.6 287 76.3
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 1.1e-123 446.8 287 77.0
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 1.4e-123 446.4 287 74.9
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 1.8e-123 446.0 287 76.7
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 1.8e-123 446.0 287 76.7
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 1.8e-123 446.0 287 75.3
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 2.4e-123 445.7 287 75.6
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.4e-123 445.7 287 74.9
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 2.4e-123 445.7 285 77.2
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 3.1e-123 445.3 287 77.0
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 4.1e-123 444.9 285 76.1
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 4.1e-123 444.9 287 76.7
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 4.1e-123 444.9 287 76.0
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 5.3e-123 444.5 287 76.7
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 9.0e-123 443.7 285 76.8
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 9.0e-123 443.7 285 76.8
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.5e-122 443.0 287 74.9
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 4.5e-122 441.4 287 75.6
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 5.9e-122 441.0 288 74.7
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 2.9e-121 438.7 287 75.3
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 8.5e-121 437.2 287 73.9
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 1.4e-120 436.4 287 74.6
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 1.4e-120 436.4 287 76.3
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 1.9e-120 436.0 273 76.9
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.9e-120 436.0 287 73.9
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 7.2e-120 434.1 287 73.5
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 1.6e-119 433.0 287 73.2
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 1.6e-119 433.0 285 73.3
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 1.6e-119 433.0 287 73.2
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 2.1e-119 432.6 285 76.1
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 2.7e-119 432.2 285 73.0
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 3.6e-119 431.8 287 72.8
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 3.6e-119 431.8 285 73.3
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 6.1e-119 431.0 285 72.6
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 7.9e-119 430.6 287 75.3
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.0e-118 430.3 293 71.3
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.0e-118 430.3 285 72.6
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 1.8e-118 429.5 285 72.6
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 1.8e-118 429.5 285 72.6
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 1.8e-118 429.5 295 71.9
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 1.8e-118 429.5 282 74.8
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 2.3e-118 429.1 288 74.3
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 3.0e-118 428.7 287 72.1
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 5.1e-118 427.9 287 73.2
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 5.1e-118 427.9 288 74.0
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 8.8e-118 427.2 287 72.1
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 8.8e-118 427.2 287 72.1
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 8.8e-118 427.2 287 72.1
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 8.8e-118 427.2 287 72.1
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 8.8e-118 427.2 287 72.8
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 1.1e-117 426.8 287 72.8
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.5e-117 426.4 285 71.9
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 1.5e-117 426.4 287 72.5
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 2.5e-117 425.6 281 73.7
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 3.3e-117 425.2 285 71.9
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 3.3e-117 425.2 285 71.9
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 3.3e-117 425.2 285 71.9
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 5.7e-117 424.5 287 71.8
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 9.7e-117 423.7 285 71.6
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 9.7e-117 423.7 285 71.6
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 9.7e-117 423.7 285 71.6
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 9.7e-117 423.7 285 71.6
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 1.3e-116 423.3 287 71.4
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 2.8e-116 422.2 287 71.1
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 3.7e-116 421.8 285 71.2
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 6.3e-116 421.0 285 71.2
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 6.9e-115 417.5 300 71.7
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 2.2e-113 412.5 315 66.3
TAR626G0108 Trochodendron aralioides HOM05D003927 ORTHO05D004905 4.2e-112 408.3 220 89.1
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 2.0e-109 399.4 220 85.9
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 2.8e-108 395.6 287 68.6
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 1.2e-106 390.2 255 76.1
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 1.2e-106 390.2 287 69.7
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 5.9e-106 387.9 258 74.8
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 5.0e-105 384.8 258 75.2
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 4.2e-104 381.7 255 74.9
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 3.6e-103 378.6 254 75.2
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 1.7e-92 343.2 243 70.4
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 6.3e-92 341.3 287 65.5
Gohir.D02G239900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.2e-90 337.0 287 62.0
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 1.7e-89 333.2 281 58.0
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 3.7e-84 315.5 191 77.5
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 4.1e-83 312.0 287 58.9
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 1.2e-82 310.5 286 58.4
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 1.6e-82 310.1 264 63.6
SGA_v2.0_scaffold77G25372 Striga asiatica HOM05D003927 ORTHO05D004905 2.3e-78 296.2 142 100.0
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 1.9e-72 276.6 203 67.5
HanXRQChr15g0483471 Helianthus annuus HOM05D003927 ORTHO05D004905 6.6e-65 251.5 160 79.4
Zm00001eb188860 Zea mays HOM05D003927 ORTHO05D004905 7.3e-64 248.1 172 69.8
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 2.1e-63 246.5 187 67.4
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 6.2e-63 245.0 283 44.9
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 5.2e-62 241.9 254 53.5
Zm00001eb085490 Zea mays HOM05D003927 ORTHO05D004905 1.2e-61 240.7 186 64.5
Zm00001eb010380 Zea mays HOM05D003927 ORTHO05D004905 2.3e-57 226.5 176 64.2
Dinv29313 Davidia involucrata HOM05D003927 ORTHO05D004905 9.5e-56 221.1 109 95.4
AagrBONN_evm.TU.Sc2ySwM_362.1916 Anthoceros agrestis HOM05D003927 ORTHO05D004905 1.5e-53 213.8 201 52.7
Dinv29312 Davidia involucrata HOM05D003927 ORTHO05D004905 3.4e-53 212.6 164 66.5
HPP92_026365 Vanilla planifolia HOM05D003927 ORTHO05D004905 5.4e-51 205.3 164 62.8
Cre07.g345300 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D004905 2.1e-50 203.4 293 41.6
AT1G31070 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 2.3e-49 199.9 162 61.1
HPP92_026366 Vanilla planifolia HOM05D003927 ORTHO05D004905 3.9e-49 199.1 108 85.2
SEGI_30940 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 1.8e-46 190.3 111 78.4
PRCOL_00005739 Prasinoderma coloniale HOM05D003927 ORTHO05D004905 4.9e-44 182.2 216 45.4
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 3.5e-42 176.0 292 36.0
Mapoly0089s0037 Marchantia polymorpha HOM05D003927 ORTHO05D004905 5.3e-38 162.2 161 49.7
SEGI_21324 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 1.7e-36 157.1 97 79.4
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 1.1e-35 154.5 293 34.1
Atru.ctg1436.5 Acer truncatum HOM05D003927 ORTHO05D004905 1.7e-28 130.6 273 32.2
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 3.7e-23 112.8 96 59.4
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 2.9e-20 103.2 208 35.6
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 2.9e-20 103.2 189 37.6
Peaxi162Scf00298g00083 Petunia axillaris HOM05D003927 ORTHO05D004905 6.0e-18 95.5 80 63.8
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 4.3e-16 89.4 203 35.0
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 6.9e-14 82.0 175 31.4
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 3.8e-12 76.3 223 30.9
TAR626G1704 Trochodendron aralioides HOM05D003927 ORTHO05D004905 6.9e-06 55.5 27 85.2


User provided reference genes

Program Settings