Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 4.1e-110 401.4 198 100.0
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 3.2e-86 322.0 198 79.3
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 4.6e-85 318.2 196 75.0
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 8.7e-84 313.9 196 75.0
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.9e-83 312.8 196 74.0
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.8e-82 308.9 196 74.5
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 2.0e-80 302.8 196 69.4
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 2.0e-80 302.8 196 71.9
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 3.4e-80 302.0 196 70.9
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 7.6e-80 300.8 195 70.8
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 7.6e-80 300.8 198 71.7
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 9.9e-80 300.4 196 70.4
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 2.2e-79 299.3 196 69.4
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 2.2e-79 299.3 195 69.7
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 2.9e-79 298.9 195 71.3
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 2.9e-79 298.9 196 70.4
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 3.8e-79 298.5 196 71.4
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 4.9e-79 298.1 195 70.3
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.9e-79 298.1 198 69.2
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 4.9e-79 298.1 196 71.9
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 6.4e-79 297.7 195 69.7
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 8.4e-79 297.4 196 68.9
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.1e-78 297.0 198 68.7
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 1.1e-78 297.0 196 68.4
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.4e-78 296.6 198 69.2
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.4e-78 296.6 196 67.9
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.4e-78 296.6 196 68.9
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 68.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 4.2e-78 295.0 195 68.7
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 69.2
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 7.1e-78 294.3 195 67.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 9.3e-78 293.9 195 71.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 9.3e-78 293.9 195 70.3
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.6e-77 293.1 195 67.7
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.6e-77 293.1 195 67.2
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.1e-77 292.7 196 67.3
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 6.0e-77 291.2 195 69.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.9e-77 290.8 192 70.8
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.0e-76 290.4 196 68.9
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.0e-76 290.4 195 69.7
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.3e-76 290.0 195 68.2
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 66.7
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 3.9e-76 288.5 196 68.9
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 66.7
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 5.1e-76 288.1 196 68.4
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 6.6e-76 287.7 196 68.9
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 8.7e-76 287.3 196 67.3
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 67.7
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.1e-75 287.0 196 68.4
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 2.5e-75 285.8 198 67.7
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.5e-75 285.8 198 67.7
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 3.3e-75 285.4 197 68.5
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.3e-75 285.4 197 67.5
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 4.3e-75 285.0 198 66.2
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 4.3e-75 285.0 195 68.2
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 5.6e-75 284.6 196 68.9
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 7.3e-75 284.3 196 66.8
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 7.3e-75 284.3 196 66.3
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 66.2
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 1.6e-74 283.1 195 67.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 2.1e-74 282.7 198 66.7
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 3.6e-74 282.0 184 72.3
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 4.8e-74 281.6 197 68.0
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 4.8e-74 281.6 181 72.4
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 4.8e-74 281.6 198 67.2
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 4.8e-74 281.6 196 65.3
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 8.1e-74 280.8 196 64.8
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 8.1e-74 280.8 194 66.0
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.8e-73 279.6 197 67.5
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.8e-73 279.6 189 68.8
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.8e-73 279.6 196 65.8
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.1e-73 278.9 184 71.2
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.3e-73 278.1 196 65.8
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 6.9e-73 277.7 191 65.4
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.0e-73 277.3 184 71.2
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 9.0e-73 277.3 184 71.2
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.2e-72 276.9 196 65.8
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.2e-72 276.9 183 69.9
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.2e-72 276.9 195 64.6
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 1.5e-72 276.6 196 65.3
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.0e-72 276.2 197 67.0
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.6e-72 275.8 194 66.0
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 3.4e-72 275.4 192 65.6
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.5e-72 275.0 196 65.8
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 4.5e-72 275.0 196 63.3
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 4.5e-72 275.0 195 65.1
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.5e-72 275.0 198 64.6
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.7e-71 273.1 196 66.3
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 2.2e-71 272.7 184 70.1
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 3.8e-71 271.9 197 64.5
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.8e-71 271.9 195 65.1
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 4.9e-71 271.6 181 67.4
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 8.4e-71 270.8 196 64.8
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 7.1e-70 267.7 198 64.6
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.2e-69 266.9 196 65.3
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.6e-69 266.5 189 67.7
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.7e-69 265.8 198 64.1
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.7e-69 265.8 189 65.1
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 1.8e-68 263.1 184 68.5
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 3.0e-68 262.3 198 62.6
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 3.0e-68 262.3 198 62.6
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 5.1e-68 261.5 198 64.1
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 6.7e-68 261.2 198 62.6
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 8.7e-68 260.8 196 61.2
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.1e-67 260.4 196 59.7
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.5e-67 260.0 192 65.6
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 4.3e-67 258.5 198 61.6
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 1.6e-66 256.5 196 61.7
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.6e-66 256.5 180 67.2
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 2.8e-66 255.8 198 62.6
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 3.7e-66 255.4 197 62.9
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.8e-65 253.1 196 60.2
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 6.9e-65 251.1 196 59.7
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.5e-64 250.0 193 62.7
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 4.5e-64 248.4 196 57.7
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 1.3e-60 236.9 178 62.9
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 1.1e-59 233.8 187 59.4
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.3e-58 230.3 187 58.3
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.8e-58 229.2 181 61.3
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 4.1e-57 225.3 162 66.7
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.4e-54 216.9 155 65.8
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.2e-54 215.7 142 69.7
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 3.2e-54 215.7 185 53.5
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 2.7e-53 212.6 142 66.9
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.5e-53 212.2 169 58.6
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 6.1e-53 211.5 190 52.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 7.9e-53 211.1 144 68.1
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 2.2e-50 203.0 156 60.3
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.8e-49 199.9 185 50.3
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 9.0e-49 197.6 195 51.3
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.5e-48 196.8 197 51.8
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 2.1e-45 186.4 142 59.2
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 3.3e-43 179.1 112 69.6
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 2.2e-39 166.4 109 66.1
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 2.5e-38 162.9 196 44.9
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.2e-37 160.6 126 60.3
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.8e-36 156.8 191 44.5
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 2.8e-34 149.4 180 42.8
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 4.1e-33 145.6 183 47.0
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 2.7e-24 116.3 161 37.9
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.9e-22 110.2 67 71.6
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 9.4e-22 107.8 72 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.4e-20 104.0 113 47.8
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 4.0e-20 102.4 107 49.5
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 8.8e-20 101.3 112 48.2
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 3.4e-19 99.4 120 44.2
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 7.5e-19 98.2 194 36.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 4.1e-17 92.4 68 58.8
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.9e-14 83.6 64 56.2
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 4.0e-12 75.9 56 64.3
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 3.1e-09 66.2 43 67.4
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 1.9e-06 57.0 35 71.4


User provided reference genes

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