Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 3.6e-277 957.6 476 100.0
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.2e-171 607.1 490 64.3
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 4.5e-155 552.0 498 56.4
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 3.3e-153 545.8 451 60.5
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.7e-149 532.3 494 56.7
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.7e-146 523.5 495 54.3
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.1e-145 520.8 494 55.5
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 7.3e-145 518.1 494 54.7
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 2.8e-144 516.2 453 56.5
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 3.6e-144 515.8 497 53.5
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 8.0e-144 514.6 497 53.3
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.4e-143 513.8 499 53.7
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.2e-142 510.8 494 53.4
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.3e-141 507.3 457 56.0
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.7e-141 506.9 494 53.8
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 8.6e-138 494.6 491 52.5
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 5.6e-137 491.9 492 53.7
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 7.3e-137 491.5 491 52.3
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.1e-135 487.6 494 50.8
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.8e-135 486.9 496 52.2
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 3.1e-135 486.1 491 52.3
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.2e-134 484.2 494 52.0
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 3.4e-134 482.6 494 50.8
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 3.7e-133 479.2 495 49.7
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 3.7e-133 479.2 494 50.6
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 3.7e-133 479.2 495 49.5
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 8.3e-133 478.0 514 48.8
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.9e-132 476.9 495 49.9
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 7.1e-132 474.9 494 51.0
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.6e-131 473.8 493 51.1
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.6e-131 473.8 491 51.1
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 3.5e-131 472.6 493 50.3
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.7e-130 470.3 493 49.3
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.5e-129 467.2 494 48.6
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 3.3e-129 466.1 497 48.7
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.2e-128 464.2 494 48.8
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.2e-128 464.2 494 50.4
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 4.7e-128 462.2 496 49.6
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 2.3e-127 459.9 493 47.3
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 5.2e-127 458.8 455 52.5
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.2e-126 457.6 451 52.3
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.7e-125 453.8 495 47.7
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.7e-125 453.8 495 48.9
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.7e-125 453.8 495 48.9
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 2.9e-125 453.0 500 47.8
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 3.2e-124 449.5 459 50.8
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 7.1e-124 448.4 495 46.7
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 9.2e-124 448.0 497 46.5
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.2e-123 447.6 499 47.7
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.2e-123 447.6 495 48.1
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.6e-123 447.2 494 47.6
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 3.5e-123 446.0 494 47.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 6.0e-123 445.3 497 46.3
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.0e-122 444.5 498 46.0
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.0e-122 444.5 502 48.0
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 3.9e-122 442.6 495 45.9
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 5.1e-122 442.2 496 46.0
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.5e-121 440.7 495 46.1
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 9.6e-121 438.0 495 46.1
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 9.6e-121 438.0 454 48.5
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.2e-120 437.6 494 45.5
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.6e-120 437.2 482 47.9
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 4.7e-120 435.6 499 46.1
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 6.2e-120 435.3 494 44.9
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 6.2e-120 435.3 454 49.8
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 8.1e-120 434.9 454 49.6
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.8e-119 433.7 453 48.6
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 2.4e-119 433.3 499 46.7
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 4.0e-119 432.6 455 51.2
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 4.0e-119 432.6 454 48.0
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 5.2e-119 432.2 497 48.5
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 5.2e-119 432.2 494 46.6
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 6.9e-119 431.8 495 44.8
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 1.2e-118 431.0 453 48.6
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.2e-118 431.0 454 48.9
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 3.4e-118 429.5 496 45.8
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 5.8e-118 428.7 482 46.7
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 7.6e-118 428.3 479 47.0
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.3e-117 427.6 454 48.9
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 4.9e-117 425.6 496 47.8
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 6.4e-117 425.2 454 47.4
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.4e-116 424.1 496 47.4
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.9e-116 423.7 498 45.2
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.9e-116 423.7 494 46.4
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.9e-116 423.7 495 44.4
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 2.4e-116 423.3 502 46.4
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 4.2e-116 422.5 493 44.0
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.6e-115 420.6 493 45.0
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 2.1e-115 420.2 495 45.1
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 2.5e-113 413.3 492 43.3
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 5.6e-113 412.1 489 43.6
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.3e-112 411.0 492 44.1
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 2.8e-112 409.8 496 45.2
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 3.1e-111 406.4 457 44.4
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 6.9e-111 405.2 496 44.8
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.8e-109 399.4 439 46.0
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 2.1e-107 393.7 457 44.6
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 7.9e-107 391.7 451 45.7
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 2.3e-106 390.2 453 51.9
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.6e-99 367.5 458 43.4
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 6.7e-98 362.1 456 43.9
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 1.5e-97 360.9 452 42.3
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 5.6e-97 359.0 455 41.8
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 2.4e-95 353.6 428 44.2
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 5.3e-95 352.4 454 43.8
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.1e-84 318.2 455 39.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.3e-82 311.2 400 40.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.3e-82 311.2 400 40.8
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.1e-76 291.6 278 51.8
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.5e-76 289.3 351 49.0
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 4.4e-73 279.6 328 45.1
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 9.1e-71 271.9 485 34.4
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.0e-69 268.5 447 34.0
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 8.8e-66 255.4 391 39.1
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 2.6e-57 227.3 473 30.4
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 8.8e-50 202.2 501 29.3
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.0e-45 188.7 391 33.2
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.2e-44 183.3 195 46.7
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 2.7e-38 164.1 161 50.3
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.3e-37 161.8 161 49.1
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 2.8e-35 154.1 498 25.3
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.8e-33 146.4 126 50.0
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.8e-33 146.4 126 50.0
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 3.7e-32 143.7 125 50.4
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.4e-32 142.9 123 50.4
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.8e-27 127.5 101 57.4
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 3.6e-27 127.1 386 25.6
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 4.0e-26 123.6 286 28.0
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 6.8e-26 122.9 386 26.2
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 7.5e-25 119.4 109 49.5
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 9.2e-23 112.5 249 35.7
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 4.0e-18 97.1 73 63.0
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 7.8e-14 82.8 168 32.7
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 6.6e-13 79.7 120 35.8
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 6.2e-11 73.2 87 43.7
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.8e-10 71.6 87 43.7
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.4e-09 67.4 69 44.9
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 4.1e-07 60.5 38 68.4
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.2e-06 58.9 38 68.4


User provided reference genes

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