Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.9e-86 322.4 155 100.0
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.0e-63 245.4 155 78.7
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.0e-63 245.4 155 76.8
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.6e-62 241.1 155 76.1
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.1e-61 239.2 155 74.8
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 4.4e-59 231.5 155 75.5
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 4.4e-59 231.5 155 74.8
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 8.3e-58 227.3 155 72.3
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 8.9e-52 207.2 157 66.9
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 4.4e-51 204.9 142 69.7
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 7.6e-51 204.1 157 64.3
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 1.3e-50 203.4 157 65.0
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.7e-50 203.0 157 63.1
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.9e-50 202.2 157 63.1
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 2.9e-50 202.2 157 65.0
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 2.9e-50 202.2 157 64.3
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 3.8e-50 201.8 157 65.0
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 8.4e-50 200.7 157 63.7
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 8.4e-50 200.7 145 67.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 1.1e-49 200.3 157 63.7
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.4e-49 199.9 157 63.1
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.9e-49 199.5 157 63.7
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 5.4e-49 198.0 157 62.4
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 7.1e-49 197.6 157 63.1
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.2e-48 196.8 157 62.4
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.2e-48 196.8 157 62.4
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.1e-48 196.1 157 63.1
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 2.7e-48 195.7 155 63.2
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 2.7e-48 195.7 157 63.1
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.7e-48 195.7 157 62.4
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.7e-48 195.7 157 62.4
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 3.5e-48 195.3 157 61.8
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 3.5e-48 195.3 157 61.8
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 6.0e-48 194.5 145 66.2
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 6.0e-48 194.5 157 62.4
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 7.8e-48 194.1 157 61.8
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 7.8e-48 194.1 157 63.1
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.3e-47 193.4 157 61.1
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.7e-47 193.0 154 63.0
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.7e-47 193.0 157 61.8
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 3.0e-47 192.2 143 65.7
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 3.9e-47 191.8 156 61.5
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 8.7e-47 190.7 157 60.5
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 8.7e-47 190.7 157 61.1
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.5e-46 189.9 157 61.1
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.5e-46 189.9 157 61.1
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.5e-46 189.9 157 61.1
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 2.5e-46 189.1 156 60.9
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 2.5e-46 189.1 157 60.5
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 4.3e-46 188.3 157 59.9
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 4.3e-46 188.3 145 64.1
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 4.3e-46 188.3 157 61.8
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 5.6e-46 188.0 157 59.9
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 7.3e-46 187.6 157 60.5
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 9.6e-46 187.2 157 60.5
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.3e-45 186.8 145 62.8
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.6e-45 186.4 157 59.2
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.8e-45 185.7 145 62.1
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.8e-45 185.7 145 61.4
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.6e-45 185.3 157 59.9
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 3.6e-45 185.3 145 63.4
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 4.8e-45 184.9 145 62.8
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 4.8e-45 184.9 157 58.6
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 4.8e-45 184.9 142 62.7
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.8e-45 184.9 145 62.8
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 6.2e-45 184.5 157 59.2
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 6.2e-45 184.5 157 60.5
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 6.2e-45 184.5 157 60.5
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.1e-44 183.7 145 62.1
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.4e-44 183.3 145 62.8
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.8e-44 183.0 157 57.3
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 2.4e-44 182.6 139 62.6
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.1e-44 182.2 157 59.2
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 4.0e-44 181.8 142 62.7
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 4.0e-44 181.8 157 59.2
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 4.0e-44 181.8 145 60.7
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 5.3e-44 181.4 156 60.3
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 5.3e-44 181.4 157 58.6
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 5.3e-44 181.4 145 61.4
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 6.9e-44 181.0 156 59.6
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 6.9e-44 181.0 156 59.6
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 9.0e-44 180.6 157 57.3
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 9.0e-44 180.6 157 57.3
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 9.0e-44 180.6 157 57.3
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 9.0e-44 180.6 157 59.9
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.2e-43 180.3 145 61.4
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.2e-43 180.3 157 58.6
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.5e-43 179.9 141 63.1
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.5e-43 179.9 147 59.2
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.0e-43 179.5 157 56.7
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 2.6e-43 179.1 193 50.8
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 2.6e-43 179.1 193 50.8
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 4.4e-43 178.3 157 56.7
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 4.4e-43 178.3 157 56.7
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 4.4e-43 178.3 157 56.7
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 4.4e-43 178.3 157 56.7
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 4.4e-43 178.3 157 56.7
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 4.4e-43 178.3 157 56.7
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 9.9e-43 177.2 157 56.7
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 9.9e-43 177.2 145 59.3
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.3e-42 176.8 185 52.4
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.7e-42 176.4 157 58.0
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.7e-42 176.4 145 59.3
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.7e-42 176.4 145 59.3
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.7e-42 176.4 156 59.6
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.2e-42 176.0 153 58.8
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 2.9e-42 175.6 157 56.7
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 2.9e-42 175.6 153 58.8
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 4.9e-42 174.9 153 59.5
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 8.4e-42 174.1 157 56.1
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 8.4e-42 174.1 157 56.1
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 8.4e-42 174.1 157 56.1
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.4e-41 173.3 144 57.6
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.9e-41 172.9 143 58.0
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.9e-41 172.9 156 59.0
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.9e-41 172.9 163 54.0
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.4e-41 172.6 141 60.3
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.4e-41 172.6 143 57.3
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 3.2e-41 172.2 145 59.3
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 3.2e-41 172.2 145 60.7
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.2e-41 171.8 157 55.4
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.2e-41 171.8 157 55.4
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.2e-40 170.2 143 57.3
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.6e-40 169.9 141 59.6
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 2.7e-40 169.1 147 55.8
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 4.6e-40 168.3 145 59.3
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 4.6e-40 168.3 143 56.6
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.3e-39 166.8 153 56.2
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 2.3e-39 166.0 142 58.5
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.3e-39 166.0 153 56.2
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 2.3e-39 166.0 150 55.3
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 5.1e-39 164.9 138 56.5
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 8.7e-39 164.1 147 54.4
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 5.6e-38 161.4 131 61.8
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 7.3e-38 161.0 206 44.2
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 2.1e-37 159.5 141 56.0
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.8e-37 158.3 190 48.9
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.0e-35 152.9 157 53.5
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 3.4e-35 152.1 147 55.1
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 5.8e-35 151.4 132 59.8
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 5.8e-35 151.4 157 53.5
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.2e-34 149.4 141 51.8
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.2e-34 149.4 141 51.8
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 6.0e-32 141.4 141 48.2
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.3e-31 140.2 140 52.1
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 8.7e-31 137.5 140 50.7
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.3e-29 133.7 145 48.3
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 2.1e-29 132.9 274 32.8
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.4e-28 130.2 147 45.6
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.4e-28 129.4 145 46.9
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.4e-28 129.4 123 56.1
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 3.1e-28 129.0 143 44.8
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.1e-28 129.0 144 47.2
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.0e-28 128.6 144 46.5
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 9.0e-28 127.5 74 83.8
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 2.1e-24 116.3 74 78.4
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.3e-23 113.6 66 75.8
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 5.1e-23 111.7 67 74.6
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 9.6e-22 107.5 131 42.0
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 1.3e-21 107.1 76 72.4
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.6e-21 106.7 87 60.9
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 4.0e-20 102.1 76 69.7
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 5.8e-19 98.2 67 67.2
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.8e-15 86.7 139 35.3
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 6.7e-15 84.7 74 59.5
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 6.7e-15 84.7 74 59.5
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 8.7e-15 84.3 108 42.6
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 8.7e-15 84.3 108 42.6
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 8.7e-15 84.3 108 42.6
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 5.7e-14 81.6 136 38.2
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.3e-10 70.5 39 74.4
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 4.6e-08 62.0 34 76.5
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 1.0e-07 60.8 40 65.0
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 1.0e-07 60.8 34 73.5
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 6.7e-07 58.2 58 46.6
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 1.5e-06 57.0 37 62.2
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 4.3e-06 55.5 71 42.3
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 7.4e-06 54.7 56 46.4


User provided reference genes

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