Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 0.0e+00 1342.8 745 100.0
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.6e-165 586.6 715 51.5
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.1e-128 464.9 716 44.3
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.6e-114 416.8 720 43.8
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.9e-91 341.3 758 38.4
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.5e-83 315.1 762 35.4
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 5.6e-83 313.2 733 39.7
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 3.4e-80 303.9 642 41.4
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.2e-79 301.2 745 37.7
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 2.2e-79 301.2 734 39.5
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.9e-79 300.1 684 38.5
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.4e-78 298.5 779 34.9
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 9.2e-78 295.8 709 36.2
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.5e-67 261.9 726 33.9
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 5.6e-67 260.0 624 36.1
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.6e-66 257.3 739 34.0
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.4e-62 244.6 751 34.0
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 9.2e-62 242.7 751 34.4
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 6.0e-61 240.0 491 42.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.6e-58 230.7 803 31.9
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.0e-57 227.3 468 38.5
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 8.9e-57 226.1 744 34.9
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 4.4e-56 223.8 775 31.1
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 5.8e-56 223.4 459 40.7
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.7e-55 221.9 263 52.1
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.9e-54 218.4 687 31.4
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.6e-53 215.3 670 34.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 4.6e-53 213.8 721 31.1
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 3.3e-51 207.6 731 35.4
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 3.4e-48 197.6 262 49.2
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 4.4e-48 197.2 277 47.7
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.2e-47 194.9 265 46.4
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.2e-47 194.9 478 36.0
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 3.8e-47 194.1 600 31.2
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 8.4e-47 193.0 637 31.1
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 8.4e-47 193.0 457 34.1
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.1e-46 192.6 702 31.8
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-46 192.6 648 30.2
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.9e-46 191.8 471 35.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.2e-46 191.0 726 30.4
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 4.2e-46 190.7 285 45.3
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 5.4e-46 190.3 409 41.6
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 9.3e-46 189.5 268 46.3
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.7e-45 188.0 606 37.3
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 3.5e-45 187.6 763 29.6
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.7e-44 185.3 584 30.5
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.7e-44 185.3 146 65.8
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.9e-44 184.1 267 45.7
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 3.9e-44 184.1 557 37.3
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 3.9e-44 184.1 722 30.1
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 6.6e-44 183.3 588 31.8
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 8.7e-44 183.0 557 32.3
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.6e-43 180.3 711 28.8
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.3e-42 179.1 632 32.6
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 8.1e-42 176.4 283 42.8
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.4e-41 175.6 265 42.6
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.8e-41 175.3 262 44.7
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 6.9e-41 173.3 708 29.5
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.2e-40 172.6 159 61.0
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.2e-40 172.6 439 33.9
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.6e-40 171.4 283 44.9
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.7e-39 168.7 276 41.7
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 6.4e-39 166.8 632 30.1
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 8.4e-39 166.4 276 42.0
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 5.4e-38 163.7 278 41.7
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 9.3e-38 162.9 665 30.1
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.6e-37 162.2 754 28.0
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.6e-37 162.2 282 43.3
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.1e-37 161.8 291 41.2
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.1e-37 161.8 283 40.3
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 3.5e-37 161.0 812 27.5
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.0e-36 159.5 625 29.9
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 5.1e-36 157.1 562 30.6
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 5.1e-36 157.1 265 41.9
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 8.7e-36 156.4 269 41.6
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.9e-35 155.2 266 41.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.9e-35 155.2 547 32.0
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 3.3e-35 154.5 463 37.8
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 3.3e-35 154.5 264 41.7
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.3e-34 152.5 283 40.6
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.1e-33 149.4 267 41.6
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 3.1e-33 147.9 279 39.4
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 4.0e-33 147.5 267 42.3
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 6.9e-33 146.7 290 35.5
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-32 146.0 283 38.9
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.2e-32 146.0 283 38.9
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.2e-32 146.0 666 29.4
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 2.6e-32 144.8 760 27.1
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 3.4e-32 144.4 282 40.4
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.0e-31 142.9 237 43.0
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.3e-31 142.5 287 38.0
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-31 142.1 257 40.9
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 2.9e-31 141.4 183 47.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 2.9e-31 141.4 716 27.9
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 6.4e-31 140.2 734 25.2
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 8.4e-31 139.8 280 37.1
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.1e-30 139.4 729 27.0
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-30 139.4 676 28.8
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 2.5e-30 138.3 244 40.2
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 4.2e-30 137.5 271 36.5
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.3e-30 136.3 487 31.4
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.2e-29 136.0 280 37.1
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.6e-29 135.6 251 40.6
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.7e-29 134.8 705 27.9
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 3.5e-29 134.4 279 36.6
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.5e-29 134.4 290 37.2
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 7.9e-29 133.3 271 36.9
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.3e-28 131.7 284 35.9
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.5e-27 129.0 253 39.5
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 1.9e-27 128.6 128 52.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 3.3e-27 127.9 238 40.3
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 4.8e-26 124.0 266 33.8
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 6.2e-26 123.6 171 48.0
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.1e-25 122.9 258 38.0
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.4e-25 121.7 182 38.5
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 4.0e-25 120.9 262 34.4
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 9.0e-25 119.8 263 36.1
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.6e-24 116.7 264 33.7
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.2e-23 115.2 182 39.6
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 6.5e-23 113.6 219 40.2
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-22 112.1 263 33.8
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.5e-22 111.7 686 25.5
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 2.5e-22 111.7 250 37.6
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 7.1e-22 110.2 259 33.2
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 2.1e-21 108.6 458 30.1
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 3.9e-20 104.4 615 25.4
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-19 99.8 234 32.5
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 9.7e-19 99.8 221 32.6
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.3e-18 99.4 98 48.0
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.3e-18 99.4 98 48.0
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.3e-18 99.4 281 34.5
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 2.8e-18 98.2 261 33.3
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 3.7e-18 97.8 135 43.0
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.2e-16 92.8 147 43.5
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.5e-16 92.4 61 67.2
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.0e-15 89.7 228 34.6
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.3e-15 89.4 290 29.7
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.2e-15 88.6 294 29.3
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.4e-14 85.9 362 29.3
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.4e-14 85.9 217 35.5
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 7.2e-14 83.6 85 44.7
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 7.2e-14 83.6 162 37.7
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 3.6e-13 81.3 158 36.1
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 3.9e-12 77.8 149 31.5
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.1e-12 77.4 158 36.1
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 6.7e-12 77.0 55 67.3
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 8.2e-10 70.1 55 58.2
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 8.2e-10 70.1 536 25.6
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 5.3e-09 67.4 61 57.4
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.1e-09 66.6 463 24.8
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 2.9e-07 61.6 470 24.5
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 6.5e-07 60.5 283 30.4
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 8.5e-07 60.1 81 45.7
Cfa024558 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.1e-06 59.7 64 45.3
Solyc02g081640.4 Solanum lycopersicum HOM05D003739 ORTHO05D003996 1.4e-06 59.3 378 29.1
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 3.2e-06 58.2 79 44.3
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 7.2e-06 57.0 207 27.1


User provided reference genes

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