Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.0e-142 509.2 283 100.0
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 5.9e-86 321.6 286 68.5
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.6e-78 297.0 286 66.4
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.7e-78 296.2 282 66.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.5e-78 295.8 282 66.3
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 3.1e-74 282.7 287 64.8
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 6.8e-74 281.6 287 61.3
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 8.9e-74 281.2 289 64.4
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.4e-73 278.9 293 61.4
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 7.5e-73 278.1 286 61.9
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.3e-72 277.3 288 62.5
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.3e-72 277.3 285 59.6
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 2.2e-72 276.6 287 60.6
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 2.2e-72 276.6 286 62.6
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.9e-72 276.2 284 62.3
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 3.7e-72 275.8 287 63.1
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.1e-71 274.2 287 59.6
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.9e-71 273.5 293 60.8
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 3.2e-71 272.7 287 59.6
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 5.4e-71 271.9 287 62.4
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.4e-71 271.9 286 60.5
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.2e-70 270.8 287 59.2
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.6e-70 270.4 288 60.4
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 1.6e-70 270.4 287 62.7
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.6e-70 270.4 288 60.4
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 2.1e-70 270.0 285 60.0
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 3.5e-70 269.2 285 60.0
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 3.5e-70 269.2 287 60.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.0e-70 268.5 285 60.7
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.3e-69 267.3 285 60.4
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 3.0e-69 266.2 289 59.9
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.5e-68 263.8 287 60.6
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.9e-68 263.5 288 59.7
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-68 263.5 285 59.6
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 9.5e-68 261.2 290 60.0
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 9.5e-68 261.2 287 57.8
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.2e-67 260.8 284 60.2
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.2e-67 260.8 284 60.6
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.2e-67 260.8 286 59.1
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.2e-67 260.8 285 61.4
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 1.1e-66 257.7 285 58.9
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.4e-66 257.3 285 58.6
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.1e-66 256.1 285 57.2
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.1e-66 256.1 280 57.1
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.0e-66 255.8 286 57.0
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 6.8e-66 255.0 277 60.3
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 2.6e-65 253.1 284 54.9
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.6e-65 253.1 286 57.7
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.6e-65 253.1 304 54.9
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 3.4e-65 252.7 290 56.6
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 7.5e-65 251.5 290 56.2
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 9.9e-65 251.1 286 57.3
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 9.9e-65 251.1 294 57.5
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.7e-64 250.4 285 55.8
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.9e-64 249.6 274 58.8
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.7e-64 249.2 286 56.3
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 3.7e-64 249.2 291 57.0
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 4.9e-64 248.8 286 57.3
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.4e-63 246.5 289 54.7
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 3.2e-63 246.1 291 59.1
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 3.2e-63 246.1 293 56.7
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 4.1e-63 245.7 280 57.5
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.1e-62 243.4 285 54.0
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 2.7e-62 243.0 284 54.6
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.7e-61 240.4 279 55.2
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 3.9e-61 239.2 288 56.9
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 4.3e-60 235.7 284 51.1
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 9.5e-60 234.6 287 55.7
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 2.8e-59 233.0 283 56.5
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 3.6e-59 232.6 285 54.0
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 4.7e-59 232.3 285 53.3
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 6.2e-59 231.9 277 53.1
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.1e-58 231.1 284 52.8
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.1e-58 231.1 285 53.0
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.4e-58 229.9 281 53.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.0e-58 229.2 211 64.9
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 7.6e-57 224.9 285 52.6
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 1.3e-56 224.2 296 49.7
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.3e-56 224.2 289 55.0
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.7e-56 223.8 285 56.8
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.7e-56 223.8 282 51.8
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.7e-56 223.8 283 51.9
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 2.2e-56 223.4 289 49.8
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 4.9e-56 222.2 295 48.8
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.4e-55 220.7 285 51.2
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 1.9e-55 220.3 289 55.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.9e-55 220.3 285 55.4
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.9e-55 220.3 277 55.2
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 3.2e-55 219.5 290 55.5
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 7.1e-55 218.4 293 48.5
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.2e-55 218.0 285 56.1
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 3.5e-54 216.1 300 48.7
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 4.6e-54 215.7 300 50.0
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.3e-53 214.2 301 48.5
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 1.7e-53 213.8 302 50.0
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 6.6e-53 211.8 292 52.4
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 6.6e-53 211.8 314 50.0
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 8.7e-53 211.5 308 49.0
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 8.7e-53 211.5 285 52.6
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.5e-52 210.7 286 49.3
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.5e-52 210.7 286 50.0
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 7.3e-52 208.4 273 50.9
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.2e-51 207.6 296 50.3
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 3.6e-51 206.1 319 44.2
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 9.9e-49 198.0 287 50.2
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-47 193.7 276 49.6
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 5.4e-47 192.2 283 50.2
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 9.3e-47 191.4 287 49.1
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.2e-46 191.0 272 49.6
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 2.3e-45 186.8 203 55.2
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.3e-45 186.8 273 49.5
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 5.6e-44 182.2 275 48.0
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 8.1e-43 178.3 271 47.2
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-42 177.9 276 45.7
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.8e-42 177.2 286 46.2
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 6.9e-42 175.3 273 45.8
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.2e-41 174.5 274 44.9
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 7.6e-41 171.8 281 45.9
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.1e-39 167.9 206 50.0
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.4e-39 166.8 274 45.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 7.9e-38 161.8 283 43.5
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.2e-33 147.9 285 40.4
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 4.6e-30 136.0 289 39.1
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 1.3e-29 134.4 276 39.1
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 2.4e-26 123.6 291 35.7
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 3.8e-24 116.3 94 72.3
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.0e-21 108.2 101 60.4
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.3e-21 107.8 259 38.2
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 2.3e-21 107.1 261 34.1
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 7.4e-20 102.1 321 31.2
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 8.2e-19 98.6 64 81.2
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 5.9e-17 92.4 321 29.9
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.3e-16 91.3 64 79.7
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 5.5e-15 85.9 214 38.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.5e-12 77.8 267 28.5
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 3.3e-12 76.6 303 26.1
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 5.7e-12 75.9 208 36.1
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 4.8e-11 72.8 167 41.3
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 3.1e-10 70.1 199 35.2
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 1.3e-08 64.7 175 33.1
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 1.4e-07 61.2 179 31.8
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 4.2e-07 59.7 211 32.2


User provided reference genes

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