Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 0.0e+00 1436.0 732 100.0
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.4e-275 953.0 751 64.0
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 3.0e-267 925.2 728 63.3
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.0e-262 910.2 699 65.4
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 3.0e-251 872.1 798 56.6
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.3e-246 855.9 702 60.8
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 3.9e-246 855.1 660 65.3
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.1e-243 847.0 737 58.1
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.8e-243 846.3 704 59.9
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 2.6e-242 842.4 702 59.3
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 4.4e-242 841.6 703 60.3
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 4.4e-242 841.6 696 59.3
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 5.4e-240 834.7 700 59.7
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.3e-233 813.5 702 58.7
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 6.4e-233 811.2 710 57.5
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.9e-232 809.7 710 57.2
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 7.8e-231 804.3 705 57.4
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.7e-230 803.1 700 58.6
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 3.3e-229 798.9 747 55.4
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 8.1e-228 794.3 697 58.0
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.4e-227 793.5 701 57.6
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 8.9e-227 790.8 714 56.3
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.0e-226 789.6 711 57.4
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.6e-226 789.3 711 57.4
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 9.9e-226 787.3 703 58.0
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 9.9e-226 787.3 696 57.3
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.3e-225 786.9 751 55.5
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 4.9e-225 785.0 705 56.7
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 6.4e-225 784.6 704 56.2
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.1e-224 783.9 696 56.5
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 4.2e-224 781.9 701 56.3
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.4e-224 781.6 741 54.3
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.2e-223 780.4 742 53.6
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 3.9e-222 775.4 706 56.2
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 3.9e-222 775.4 695 57.6
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 6.6e-222 774.6 699 56.2
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.1e-221 773.9 700 56.3
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.1e-221 773.9 702 56.0
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 1.9e-221 773.1 696 58.2
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 5.6e-221 771.5 721 56.0
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 7.3e-221 771.2 707 55.4
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.6e-220 770.0 733 55.8
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 2.8e-220 769.2 699 55.5
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 4.7e-220 768.5 739 54.1
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 8.1e-220 767.7 692 56.9
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.8e-219 766.5 743 53.4
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 9.0e-219 764.2 702 55.6
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 2.6e-218 762.7 694 55.9
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 5.8e-218 761.5 691 56.7
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.7e-217 760.0 723 53.4
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.4e-216 756.9 706 54.1
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 3.2e-216 755.7 668 56.4
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 5.4e-216 755.0 697 55.7
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.1e-215 753.1 715 53.8
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 3.5e-215 752.3 695 55.3
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 4.6e-215 751.9 618 60.2
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 7.8e-215 751.1 806 49.5
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 3.0e-214 749.2 713 54.4
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 7.3e-213 744.6 690 55.4
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.4e-211 740.3 703 53.8
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.4e-211 739.6 710 53.7
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 4.0e-211 738.8 705 54.8
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 5.3e-211 738.4 711 54.4
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 5.3e-211 738.4 708 54.9
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.6e-210 736.1 695 54.7
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 4.5e-210 735.3 712 56.3
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 7.6e-210 734.6 631 57.7
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.3e-209 733.8 695 54.8
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.7e-207 726.1 713 53.4
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 8.7e-206 721.1 673 53.5
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.1e-205 720.7 708 53.4
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 4.3e-205 718.8 699 53.9
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 9.6e-205 717.6 699 54.1
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.6e-204 716.8 698 53.2
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.6e-204 716.8 740 51.9
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.8e-203 713.4 641 56.3
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 2.0e-202 709.9 699 53.1
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 9.9e-202 707.6 727 52.8
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 9.9e-202 707.6 698 53.0
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 8.4e-201 704.5 699 53.1
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 8.4e-201 704.5 704 52.8
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.4e-201 704.5 754 51.9
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.4e-200 703.7 589 59.8
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 4.6e-199 698.7 699 52.5
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.0e-198 697.6 710 51.8
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.3e-198 697.2 744 50.3
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.5e-197 693.7 680 52.5
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.9e-189 666.8 715 49.0
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.9e-186 655.2 711 48.4
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 2.5e-184 649.8 706 48.4
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 5.7e-181 638.6 690 49.6
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.7e-180 637.1 698 49.7
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.5e-173 614.0 574 55.6
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.4e-168 597.4 677 50.1
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 7.2e-168 595.1 634 53.9
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.2e-164 583.6 698 45.1
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.2e-160 569.7 549 53.6
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.3e-156 557.8 477 59.3
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.4e-131 474.6 501 51.1
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 5.4e-123 446.0 375 59.2
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.8e-118 431.0 764 34.2
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 5.6e-112 409.5 648 38.4
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 7.6e-109 399.1 614 38.9
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 2.2e-108 397.5 621 38.3
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 7.1e-107 392.5 680 35.6
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 6.0e-106 389.4 606 38.4
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 6.4e-100 369.4 364 51.1
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.4e-99 367.5 434 48.2
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.7e-98 364.0 793 31.3
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 7.9e-90 335.9 755 31.7
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 6.7e-73 279.6 334 45.2
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.7e-72 276.6 277 55.6
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 4.8e-71 273.5 336 45.5
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 3.4e-61 240.7 547 31.6
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.3e-55 222.2 334 39.5
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 2.0e-53 214.9 172 64.0
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 5.5e-51 206.8 140 70.0
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 4.2e-43 180.6 180 48.3
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 8.8e-41 172.9 166 51.8
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-38 166.0 170 54.1
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.2e-37 162.5 456 29.8
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.7e-34 151.4 130 51.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.4e-22 110.5 75 68.0
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 3.9e-20 104.4 103 46.6
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.4e-16 91.3 71 54.9
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.4e-16 91.3 71 53.5
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 4.4e-16 90.9 125 40.0
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.0e-13 82.0 385 23.1
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 1.1e-11 76.3 85 51.8
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 1.7e-07 62.4 132 32.6
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 5.4e-06 57.4 72 41.7


User provided reference genes

Program Settings