Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21477 Striga asiatica HOM05D002994 ORTHO05D003337 3.9e-105 385.2 252 100.0
SalBow1G2572 Salvia bowleyana HOM05D002994 ORTHO05D003337 3.1e-54 216.1 255 62.0
Migut.F02068 Erythranthe guttata HOM05D002994 ORTHO05D003337 5.3e-54 215.3 276 52.2
MSTRG.9226 Avicennia marina HOM05D002994 ORTHO05D003337 4.4e-48 195.7 274 48.9
MSTRG.27426 Avicennia marina HOM05D002994 ORTHO05D003337 5.0e-44 182.2 274 50.4
Oeu007687.2 Olea europaea HOM05D002994 ORTHO05D003337 2.7e-37 159.8 216 48.6
QL05p081668 Quercus lobata HOM05D002994 ORTHO05D003337 1.1e-35 154.5 256 47.7
Potri.013G052700 Populus trichocarpa HOM05D002994 ORTHO05D003337 1.9e-35 153.7 245 49.0
Ciclev10021599m.g Citrus clementina HOM05D002994 ORTHO05D003337 3.3e-35 152.9 213 54.5
CiPaw.09G139200 Carya illinoinensis HOM05D002994 ORTHO05D003337 2.1e-34 150.2 261 44.1
Atru.chr2.1245 Acer truncatum HOM05D002994 ORTHO05D003337 3.6e-34 149.4 228 50.0
Duzib128G2066 Durio zibethinus HOM05D002994 ORTHO05D003337 4.7e-34 149.1 191 56.5
TWI34G0844 Tripterygium wilfordii HOM05D002994 ORTHO05D003337 4.7e-34 149.1 269 47.2
Dinv03229 Davidia involucrata HOM05D002994 ORTHO05D003337 6.1e-34 148.7 217 52.1
Thecc.05G260600 Theobroma cacao HOM05D002994 ORTHO05D003337 1.4e-33 147.5 193 55.4
Nitab4.5_0000344g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 1.8e-33 147.1 219 52.1
COL.COLO4_20548 Corchorus olitorius HOM05D002861 ORTHO05D003104 3.0e-33 146.4 174 59.2
Eucgr.H04156 Eucalyptus grandis HOM05D002994 ORTHO05D003337 3.0e-33 146.4 188 57.4
Gohir.D08G235500 Gossypium hirsutum HOM05D002994 ORTHO05D003337 5.2e-33 145.6 248 47.6
MD10G1185200 Malus domestica HOM05D002994 ORTHO05D003337 5.2e-33 145.6 221 47.5
Manes.09G144700 Manihot esculenta HOM05D002994 ORTHO05D003337 5.2e-33 145.6 229 50.2
Gorai.004G250100 Gossypium raimondii HOM05D002994 ORTHO05D003337 6.8e-33 145.2 248 46.0
Nitab4.5_0003944g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 2.6e-32 143.3 220 52.3
Potri.019G030400 Populus trichocarpa HOM05D002994 ORTHO05D003337 2.6e-32 143.3 225 49.8
Sabra19G0037200 Salix brachista HOM05D002994 ORTHO05D003337 2.6e-32 143.3 245 46.9
Sabra19G0039700 Salix brachista HOM05D002994 ORTHO05D003337 2.6e-32 143.3 245 46.9
Prupe.8G225000 Prunus persica HOM05D002994 ORTHO05D003337 7.5e-32 141.7 260 41.9
Sopen04g022430 Solanum pennellii HOM05D002994 ORTHO05D003337 7.5e-32 141.7 221 51.6
Nn1g07964 Nelumbo nucifera HOM05D002994 ORTHO05D003337 1.3e-31 141.0 223 54.7
RcHm_v2.0_Chr6g0288361 Rosa chinensis HOM05D002994 ORTHO05D003337 1.3e-31 141.0 193 50.3
Solyc04g051120.4 Solanum lycopersicum HOM05D002994 ORTHO05D003337 1.7e-31 140.6 215 52.1
FvH4_2g21680 Fragaria vesca HOM05D002994 ORTHO05D003337 2.8e-31 139.8 188 49.5
Actinidia29397 Actinidia chinensis HOM05D002994 ORTHO05D003337 6.3e-31 138.7 259 48.6
Aqoxy2G04007 Aquilegia oxysepala HOM05D002994 ORTHO05D003337 8.3e-31 138.3 231 49.8
FAN24G2383 Fragaria x ananassa HOM05D002994 ORTHO05D003337 8.3e-31 138.3 242 42.1
Peaxi162Scf00215g00114 Petunia axillaris HOM05D002994 ORTHO05D003337 8.3e-31 138.3 184 56.5
Gohir.A08G218300 Gossypium hirsutum HOM05D002994 ORTHO05D003337 1.4e-30 137.5 191 47.6
Lj2C51T6 Lonicera japonica HOM05D002994 ORTHO05D003337 1.4e-30 137.5 184 54.9
Cpa.g.sc51.69 Carica papaya HOM05D002994 ORTHO05D003337 2.4e-30 136.7 187 52.9
Thhalv10008466m.g Eutrema salsugineum HOM05D002994 ORTHO05D003337 4.1e-30 136.0 273 43.6
Gohir.D11G250500 Gossypium hirsutum HOM05D002994 ORTHO05D003337 4.1e-30 136.0 191 46.6
Gorai.007G268600 Gossypium raimondii HOM05D002994 ORTHO05D003337 4.1e-30 136.0 191 46.6
FAN27G0312 Fragaria x ananassa HOM05D002994 ORTHO05D003337 9.2e-30 134.8 188 48.4
CANSAT01G0680 Cannabis sativa HOM05D002994 ORTHO05D003337 2.7e-29 133.3 254 48.0
PSO017G4550 Papaver somniferum HOM05D002994 ORTHO05D003337 3.5e-29 132.9 195 51.8
MELO3C012902.2 Cucumis melo HOM05D002994 ORTHO05D003337 4.5e-29 132.5 187 53.5
PSO063G0038 Papaver somniferum HOM05D002994 ORTHO05D003337 4.5e-29 132.5 196 52.6
PGR004G1910 Punica granatum HOM05D002994 ORTHO05D003337 4.5e-29 132.5 251 46.6
CsaV3_3G022500 Cucumis sativus L. HOM05D002994 ORTHO05D003337 5.9e-29 132.1 187 53.5
Glyma.11G108700 Glycine max HOM05D002994 ORTHO05D003337 1.0e-28 131.3 228 46.1
CSS0027841 Camellia sinensis var. sinensis HOM05D002994 ORTHO05D003337 1.3e-28 131.0 252 46.0
Ca_18953_v3 Cicer arietinum L. HOM05D002994 ORTHO05D003337 1.7e-28 130.6 206 44.2
vmacro11037 Vaccinium macrocarpon HOM05D002994 ORTHO05D003337 1.7e-28 130.6 235 47.7
BraA06t23760Z Brassica rapa HOM05D002994 ORTHO05D003337 2.3e-28 130.2 252 40.9
Prupe.1G354200 Prunus persica HOM05D002994 ORTHO05D003337 2.9e-28 129.8 209 51.7
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 3.9e-28 129.4 183 54.1
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 5.0e-28 129.0 168 53.6
TPR.G19622 Trifolium pratense HOM05D002994 ORTHO05D003337 5.0e-28 129.0 243 40.7
BcaB07g34096 Brassica carinata HOM05D002994 ORTHO05D003337 8.6e-28 128.3 201 42.8
C05p06630 Brassica napus HOM05D002994 ORTHO05D003337 1.9e-27 127.1 210 43.3
Sc09g0001740 Simmondsia chinensis HOM05D002994 ORTHO05D003337 1.9e-27 127.1 247 44.1
AUR62000658 Chenopodium quinoa HOM05D002994 ORTHO05D003337 3.3e-27 126.3 249 41.8
A06p05520 Brassica napus HOM05D002994 ORTHO05D003337 4.3e-27 125.9 198 43.4
Hund07151 Selenicereus undatus HOM05D002994 ORTHO05D003337 5.6e-27 125.6 279 41.9
AL1G18960 Arabidopsis lyrata HOM05D002994 ORTHO05D003337 7.3e-27 125.2 212 42.9
BolC5t29423H Brassica oleracea HOM05D002994 ORTHO05D003337 7.3e-27 125.2 220 41.4
AT1G08530 Arabidopsis thaliana HOM05D002994 ORTHO05D003337 1.2e-26 124.4 185 45.4
Phvul.011G018900 Phaseolus vulgaris HOM05D002994 ORTHO05D003337 1.6e-26 124.0 191 45.0
Sed0012175 Sechium edule HOM05D002994 ORTHO05D003337 1.6e-26 124.0 186 52.2
Lj3g0016982 Lotus japonicus HOM05D002994 ORTHO05D003337 2.1e-26 123.6 192 47.9
Duzib177G0745 Durio zibethinus HOM05D002994 ORTHO05D003337 2.8e-26 123.2 171 48.5
Lalb_Chr03g0024371 Lupinus albus HOM05D002994 ORTHO05D003337 2.8e-26 123.2 165 48.5
TAR633G1434 Trochodendron aralioides HOM05D002994 ORTHO05D003337 3.6e-26 122.9 130 57.7
Carub.0001s0789 Capsella rubella HOM05D002994 ORTHO05D003337 6.1e-26 122.1 249 39.8
ClCG07G000990 Citrullus lanatus HOM05D002994 ORTHO05D003337 6.1e-26 122.1 178 51.7
Aa31sc1107G10 Aethionema arabicum HOM05D002994 ORTHO05D003337 8.0e-26 121.7 186 46.2
Sp1g07190 Schrenkiella parvula HOM05D002994 ORTHO05D003337 8.0e-26 121.7 271 38.0
HanXRQChr05g0139071 Helianthus annuus HOM05D002994 ORTHO05D003337 1.0e-25 121.3 179 53.6
ATR0561G058 Amborella trichopoda HOM05D002994 ORTHO05D003337 3.1e-25 119.8 194 43.8
GSVIVG01026377001 Vitis vinifera HOM05D002994 ORTHO05D003337 3.1e-25 119.8 158 55.1
Haze_05231 Corylus avellana HOM05D002994 ORTHO05D003337 4.0e-25 119.4 346 37.3
Medtr4g078130 Medicago truncatula HOM05D002994 ORTHO05D003337 4.0e-25 119.4 199 42.2
CARHR008430 Cardamine hirsuta HOM05D002994 ORTHO05D003337 3.4e-24 116.3 250 38.4
Psat7g170080 Pisum sativum HOM05D002994 ORTHO05D003337 4.4e-24 115.9 237 38.8
THA.LOC104821131 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 9.8e-24 114.8 209 44.0
Lsat_1_v5_gn_8_3301 Lactuca sativa HOM05D002994 ORTHO05D003337 1.3e-23 114.4 182 51.6
EL10Ac4g09801 Beta vulgaris HOM05D002994 ORTHO05D003337 1.7e-23 114.0 255 40.8
Cc09_g03220 Coffea canephora HOM05D002994 ORTHO05D003337 2.7e-21 106.7 187 40.1
QL02p017328 Quercus lobata HOM05D002994 ORTHO05D003337 3.9e-20 102.8 127 58.3
PGSC0003DMG402023121 Solanum tuberosum HOM05D002994 ORTHO05D003337 1.1e-19 101.3 125 54.4
SEGI_02150 Sequoiadendron giganteum HOM05D002994 ORTHO05D003337 7.3e-19 98.6 152 44.7
FAN15G1600 Fragaria x ananassa HOM05D002994 ORTHO05D003337 8.0e-18 95.1 128 48.4
HPP92_021426 Vanilla planifolia HOM05D002994 ORTHO05D003337 5.2e-17 92.4 113 50.4
Rhsim02G0173800 Rhododendron simsii HOM05D002994 ORTHO05D003337 6.8e-17 92.0 156 45.5
ECA233G1668 Erigeron canadensis HOM05D002994 ORTHO05D003337 2.0e-16 90.5 132 56.8
Gohir.A11G241100 Gossypium hirsutum HOM05D002994 ORTHO05D003337 7.5e-16 88.6 93 55.9
unitig_736.g22503 Utricularia gibba HOM05D002994 ORTHO05D003337 1.7e-15 87.4 211 36.5
VMungo1127G1567 Vigna mungo HOM05D002994 ORTHO05D003337 1.7e-15 87.4 246 33.3
CBR_g41090 Chara braunii HOM05D002994 ORTHO05D003337 8.3e-15 85.1 131 49.6
Mapoly0132s0020 Marchantia polymorpha HOM05D002994 ORTHO05D003337 8.3e-15 85.1 166 36.7
Cfa021165 Carpinus fangiana HOM05D002994 ORTHO05D003337 7.1e-14 82.0 179 39.7
AagrBONN_evm.TU.Sc2ySwM_117.294 Anthoceros agrestis HOM05D002994 ORTHO05D003337 2.1e-13 80.5 116 43.1
Mapoly0067s0012 Marchantia polymorpha HOM05D002994 ORTHO05D003337 9.5e-11 71.6 113 49.6
AagrBONN_evm.TU.Sc2ySwM_368.1660 Anthoceros agrestis HOM05D002994 ORTHO05D003337 1.6e-10 70.9 153 42.5
Eucgr.H04542 Eucalyptus grandis HOM05D002994 ORTHO05D003337 8.1e-10 68.6 110 46.4
Pp3c19_6090 Physcomitrium patens HOM05D002994 ORTHO05D003337 3.1e-09 66.6 114 39.5
Pp3c21_1120 Physcomitrium patens HOM05D002994 ORTHO05D003337 3.4e-08 63.2 139 32.4
Thhalv10014442m.g Eutrema salsugineum HOM05D002994 ORTHO05D003337 5.8e-08 62.4 212 32.1
Lsat_1_v5_gn_4_141101 Lactuca sativa HOM05D002994 ORTHO05D003337 7.6e-08 62.0 147 38.8
TAR633G0952 Trochodendron aralioides HOM05D002994 ORTHO05D003337 7.6e-08 62.0 80 51.2
C09p67570 Brassica napus HOM05D002994 ORTHO05D003337 9.9e-08 61.6 166 32.5
A10p27500 Brassica napus HOM05D002994 ORTHO05D003337 1.7e-07 60.8 207 30.9
BraA10t44802Z Brassica rapa HOM05D002994 ORTHO05D003337 1.7e-07 60.8 207 30.9
HanXRQChr09g0254781 Helianthus annuus HOM05D002994 ORTHO05D003337 2.9e-07 60.1 175 34.3
AL6G20440 Arabidopsis lyrata HOM05D002994 ORTHO05D003337 3.7e-07 59.7 203 30.0
DCAR_011447 Daucus carota HOM05D002994 ORTHO05D003337 4.9e-07 59.3 151 28.5
SalBow1G5737 Salvia bowleyana HOM05D000600 ORTHO05D000432 6.4e-07 58.9 122 43.4
Sopen05g030240 Solanum pennellii HOM05D002994 ORTHO05D003337 6.4e-07 58.9 157 35.0
arahy.Tifrunner.gnm1.ann1.5U8RR1 Arachis hypogaea HOM05D002994 ORTHO05D003337 8.3e-07 58.5 151 36.4
Potri.007G081800 Populus trichocarpa HOM05D002994 ORTHO05D003337 8.3e-07 58.5 192 38.0
Solyc05g051770.3 Solanum lycopersicum HOM05D002994 ORTHO05D003337 1.1e-06 58.2 155 34.8
Nitab4.5_0004246g0050 Nicotiana tabacum HOM05D002994 ORTHO05D003337 1.4e-06 57.8 139 31.7
BolC9t59518H Brassica oleracea HOM05D002994 ORTHO05D003337 1.9e-06 57.4 93 40.9
MELO3C007487.2 Cucumis melo HOM05D002994 ORTHO05D003337 2.4e-06 57.0 109 43.1
Sabra07G0068600 Salix brachista HOM05D002994 ORTHO05D003337 3.2e-06 56.6 187 34.2
AT5G09995 Arabidopsis thaliana HOM05D002994 ORTHO05D003337 4.1e-06 56.2 172 29.1
Carub.0006s0845 Capsella rubella HOM05D002994 ORTHO05D003337 4.1e-06 56.2 164 29.9
CsaV3_6G042440 Cucumis sativus L. HOM05D002994 ORTHO05D003337 4.1e-06 56.2 109 33.9
Nitab4.5_0000818g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 4.1e-06 56.2 112 35.7
Pp3c18_21490 Physcomitrium patens HOM05D002994 ORTHO05D003337 4.1e-06 56.2 63 50.8
MBI05_g36589_MAGBIO Magnolia biondii HOM05D002994 ORTHO05D003337 5.4e-06 55.8 153 39.2
PGSC0003DMG400030098 Solanum tuberosum HOM05D002994 ORTHO05D003337 5.4e-06 55.8 157 33.8
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 7.1e-06 55.5 177 30.5
EL10Ac6g14747 Beta vulgaris HOM05D002994 ORTHO05D003337 7.1e-06 55.5 152 32.9
ClCG01G016170 Citrullus lanatus HOM05D002994 ORTHO05D003337 7.1e-06 55.5 106 41.5
Sp6g33410 Schrenkiella parvula HOM05D002994 ORTHO05D003337 7.1e-06 55.5 210 29.0
PGSC0003DMG401023121 Solanum tuberosum HOM05D002994 ORTHO05D003337 7.1e-06 55.5 78 48.7
THA.LOC104818479 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 7.1e-06 55.5 240 29.6
CARHR203320 Cardamine hirsuta HOM05D002994 ORTHO05D003337 9.2e-06 55.1 169 32.0
Os12g0430900 Oryza sativa ssp. japonica HOM05D002994 ORTHO05D003337 9.2e-06 55.1 109 38.5
PSO447G0304 Papaver somniferum HOM05D002994 ORTHO05D003337 9.2e-06 55.1 181 33.7
QL06p031359 Quercus lobata HOM05D002994 ORTHO05D003337 9.2e-06 55.1 143 28.0


User provided reference genes

Program Settings