Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.5e-130 469.5 234 100.0
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 3.0e-99 365.5 235 78.3
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 8.9e-96 354.0 238 75.6
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.3e-94 350.1 235 74.9
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 4.7e-89 331.6 235 75.7
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 5.2e-88 328.2 235 74.9
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 9.9e-87 323.9 235 70.2
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.7e-86 323.2 233 72.5
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.7e-86 323.2 233 72.5
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 8.4e-86 320.9 233 72.1
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 9.3e-85 317.4 235 71.9
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 4.6e-84 315.1 238 68.1
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 7.8e-84 314.3 239 68.6
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 8.7e-83 310.8 233 70.4
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 7.3e-82 307.8 236 68.2
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 3.6e-81 305.4 240 66.2
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.6e-81 305.4 234 64.1
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 3.6e-81 305.4 234 64.1
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.4e-80 303.5 234 63.7
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 7.6e-79 297.7 238 64.3
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 9.9e-79 297.4 242 64.9
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 3.8e-78 295.4 238 63.9
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 6.4e-78 294.7 238 63.9
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.4e-77 293.5 238 63.4
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 3.2e-77 292.4 238 63.9
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.2e-77 292.0 237 65.0
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.6e-76 290.0 237 63.7
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 6.0e-76 288.1 233 63.5
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.0e-75 287.3 235 63.0
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.0e-75 287.3 237 62.4
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.8e-75 286.6 237 62.4
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.0e-75 285.8 230 63.5
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 3.0e-75 285.8 242 63.6
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 8.7e-75 284.3 237 62.4
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 8.7e-75 284.3 233 63.5
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 4.3e-74 282.0 240 61.7
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 7.4e-74 281.2 233 63.1
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 7.4e-74 281.2 242 60.3
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 9.6e-74 280.8 230 62.2
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 9.6e-74 280.8 234 62.4
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.1e-73 279.6 233 60.9
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 2.8e-73 279.3 232 63.8
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 6.2e-73 278.1 236 62.7
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.1e-72 277.3 231 62.3
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.4e-72 276.9 240 60.0
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.4e-72 276.9 233 60.5
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.4e-72 276.9 239 60.3
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 6.9e-72 274.6 234 60.7
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 9.0e-72 274.2 234 63.2
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 9.0e-72 274.2 230 62.2
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.5e-71 273.5 231 60.6
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.5e-71 273.5 233 60.1
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 2.0e-71 273.1 234 60.7
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.0e-71 273.1 183 69.4
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 2.0e-71 273.1 233 60.1
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 3.4e-71 272.3 230 59.1
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.7e-70 270.0 238 61.3
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 3.8e-70 268.9 236 59.7
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 3.8e-70 268.9 235 58.3
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.1e-69 267.3 235 60.9
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.9e-69 266.5 230 58.7
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.4e-69 266.2 199 64.3
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 3.2e-69 265.8 232 59.5
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 9.3e-69 264.2 226 62.4
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.2e-68 263.8 199 63.3
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.1e-68 263.1 238 60.1
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 6.0e-68 261.5 231 62.8
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.3e-67 260.4 237 58.6
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.8e-67 260.0 237 58.2
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 3.9e-67 258.8 233 58.8
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.1e-66 257.3 226 60.2
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.9e-66 256.5 211 62.1
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 3.3e-66 255.8 236 58.1
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 4.3e-66 255.4 233 58.4
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 7.4e-66 254.6 232 57.8
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.6e-65 253.4 190 62.6
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.6e-65 253.4 190 62.6
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.6e-65 253.4 240 56.7
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 2.1e-65 253.1 230 56.5
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 6.2e-65 251.5 202 60.9
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 6.2e-65 251.5 235 58.3
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 6.2e-65 251.5 204 60.8
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 8.1e-65 251.1 230 57.0
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-64 250.8 230 56.1
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.1e-64 250.8 230 57.8
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.4e-64 250.4 186 65.6
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 4.0e-64 248.8 203 60.6
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.0e-64 248.8 230 56.5
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 6.9e-64 248.1 230 56.1
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 6.9e-64 248.1 190 62.6
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 6.9e-64 248.1 190 62.6
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 6.9e-64 248.1 190 63.7
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-63 247.3 202 59.9
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.2e-63 247.3 190 64.7
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.2e-63 247.3 214 57.9
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 6.5e-62 241.5 228 55.3
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.5e-60 235.7 177 65.5
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 3.0e-59 232.6 172 68.0
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 8.7e-59 231.1 180 64.4
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 7.4e-58 228.0 180 62.2
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 9.6e-58 227.6 179 62.0
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.8e-57 226.1 225 51.6
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.7e-57 225.7 234 51.3
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.8e-57 225.3 178 60.1
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 5.3e-56 221.9 225 51.1
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 2.6e-55 219.5 178 60.1
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 9.3e-53 211.1 134 72.4
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.6e-52 208.8 146 68.5
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 5.1e-43 178.7 148 58.1
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 5.1e-43 178.7 149 57.7
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 5.1e-43 178.7 184 46.7
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 8.8e-43 177.9 149 57.0
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.1e-42 177.6 148 57.4
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.5e-42 177.2 149 57.0
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.0e-42 176.8 148 57.4
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 3.3e-42 176.0 149 56.4
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 3.3e-42 176.0 149 56.4
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 3.3e-42 176.0 149 56.4
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 4.4e-42 175.6 149 57.0
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 7.4e-42 174.9 236 46.6
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 9.7e-42 174.5 149 55.7
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 9.7e-42 174.5 149 55.7
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.3e-41 174.1 146 55.5
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 4.8e-41 172.2 148 55.4
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 6.3e-41 171.8 147 55.1
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.8e-40 170.2 148 54.7
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.7e-38 163.7 164 49.4
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 7.2e-37 158.3 101 75.2
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 6.7e-35 151.8 166 47.0
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 5.0e-30 135.6 103 62.1
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 5.0e-30 135.6 103 65.0
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 2.5e-29 133.3 159 42.8
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 9.4e-29 131.3 143 43.4
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 6.1e-28 128.6 196 39.8
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 8.8e-27 124.8 214 37.4
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 7.5e-26 121.7 131 50.4
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.7e-25 119.4 236 37.7
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 6.3e-25 118.6 86 67.4
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.8e-24 117.1 138 50.0
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 6.5e-22 108.6 228 33.8
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 7.2e-21 105.1 229 32.8
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.1e-20 103.6 172 34.9
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.0e-19 101.3 179 34.1
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 3.4e-18 96.3 70 58.6
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 9.8e-18 94.7 66 68.2
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 2.8e-17 93.2 186 30.6
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 3.1e-16 89.7 101 48.5
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 5.4e-16 89.0 105 45.7
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.2e-13 79.3 113 37.2
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 6.3e-09 65.5 52 57.7
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 9.2e-08 61.6 59 47.5


User provided reference genes

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