Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 8.0e-157 557.0 270 100.0
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 3.9e-103 378.6 287 70.0
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 3.1e-92 342.4 271 64.9
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 4.1e-92 342.0 207 77.8
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 1.5e-91 340.1 261 65.9
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.4e-91 339.0 271 64.6
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 5.8e-91 338.2 207 76.8
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 1.0e-90 337.4 255 65.5
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.0e-90 337.4 232 69.4
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 1.3e-90 337.0 236 69.9
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.3e-90 337.0 250 66.4
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 1.7e-90 336.7 209 77.5
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 3.8e-90 335.5 207 77.3
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.4e-89 333.6 273 61.5
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 2.5e-89 332.8 207 76.3
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 2.5e-89 332.8 207 74.9
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 3.2e-89 332.4 275 61.5
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 3.2e-89 332.4 208 74.5
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 4.2e-89 332.0 257 65.8
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 4.2e-89 332.0 243 67.9
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 5.5e-89 331.6 275 60.7
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 9.3e-89 330.9 259 64.9
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 9.3e-89 330.9 206 76.7
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 1.2e-88 330.5 275 61.1
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 1.6e-88 330.1 247 64.4
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 2.1e-88 329.7 273 63.4
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.1e-88 329.7 207 75.8
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 2.1e-88 329.7 256 64.1
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 2.1e-88 329.7 266 59.8
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 3.5e-88 328.9 265 64.9
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 3.5e-88 328.9 281 60.9
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 3.5e-88 328.9 246 66.3
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 3.5e-88 328.9 210 73.8
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 4.6e-88 328.6 276 60.9
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.1e-88 328.2 275 60.7
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 6.1e-88 328.2 272 60.7
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 7.9e-88 327.8 250 65.6
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.0e-87 327.4 206 74.3
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 1.3e-87 327.0 208 74.5
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 1.3e-87 327.0 274 62.8
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 3.0e-87 325.9 208 73.6
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 3.0e-87 325.9 238 68.1
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 3.9e-87 325.5 207 75.4
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 3.9e-87 325.5 207 75.4
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 3.9e-87 325.5 205 74.1
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 5.1e-87 325.1 206 74.3
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 8.7e-87 324.3 207 73.9
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 8.7e-87 324.3 208 74.0
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 1.1e-86 323.9 207 74.4
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 1.5e-86 323.6 271 60.5
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.9e-86 323.2 207 74.4
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.9e-86 323.2 250 64.4
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 1.9e-86 323.2 207 73.4
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 3.3e-86 322.4 257 61.9
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 3.3e-86 322.4 208 74.0
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 7.4e-86 321.2 243 65.4
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 1.6e-85 320.1 207 73.9
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 1.6e-85 320.1 207 72.0
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 2.8e-85 319.3 207 73.4
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 3.7e-85 318.9 207 72.9
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 6.3e-85 318.2 206 71.8
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 6.3e-85 318.2 206 71.4
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 8.2e-85 317.8 255 63.9
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.1e-84 317.4 272 59.9
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 2.4e-84 316.2 233 65.2
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 2.4e-84 316.2 270 60.4
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 3.1e-84 315.8 209 72.7
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 4.1e-84 315.5 251 63.7
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 6.9e-84 314.7 208 72.1
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 6.9e-84 314.7 273 59.0
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 9.0e-84 314.3 205 71.2
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 1.5e-83 313.5 207 70.5
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 2.6e-83 312.8 246 62.6
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 2.6e-83 312.8 268 62.3
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 4.5e-83 312.0 270 58.5
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 7.7e-83 311.2 206 70.9
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 7.7e-83 311.2 243 63.8
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 1.0e-82 310.8 238 63.4
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.0e-82 310.8 207 72.0
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 2.9e-82 309.3 207 70.5
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 8.5e-82 307.8 232 65.1
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 8.5e-82 307.8 232 65.1
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.2e-81 305.8 208 68.8
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 3.2e-81 305.8 210 67.6
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 4.2e-81 305.4 207 69.1
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 7.2e-81 304.7 209 71.8
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 2.1e-80 303.1 210 67.6
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.6e-80 302.4 208 68.3
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 4.6e-80 302.0 202 71.8
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.8e-79 300.1 207 68.1
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 6.7e-79 298.1 261 57.9
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.7e-77 293.5 255 60.8
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.1e-76 290.8 268 56.0
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 2.4e-76 289.7 245 60.4
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 1.3e-74 283.9 252 58.3
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 2.9e-74 282.7 237 58.2
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 5.0e-74 282.0 205 64.9
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 2.5e-73 279.6 272 55.1
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 2.5e-73 279.6 272 54.8
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 3.2e-73 279.3 235 61.3
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 3.6e-72 275.8 166 79.5
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 4.7e-72 275.4 261 55.9
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 1.8e-71 273.5 261 55.6
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 2.3e-71 273.1 208 63.5
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 3.9e-71 272.3 214 63.1
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 1.5e-70 270.4 255 54.9
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.6e-70 269.6 176 73.3
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 4.8e-69 265.4 237 54.0
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 3.1e-68 262.7 207 58.5
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 2.0e-67 260.0 175 71.4
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 2.0e-67 260.0 207 61.4
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.7e-66 256.9 166 73.5
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 7.2e-65 251.5 176 69.9
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 5.2e-63 245.4 267 50.6
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 1.0e-58 231.1 165 67.9
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 2.9e-58 229.6 160 72.5
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 2.3e-55 219.9 150 72.7
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 7.2e-49 198.4 243 44.4
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 6.3e-45 185.3 135 65.2
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 3.1e-44 183.0 201 48.3
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 5.0e-42 175.6 122 66.4
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 1.8e-39 167.2 116 70.7
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.0e-38 163.7 117 68.4
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 2.3e-34 150.2 154 52.6
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 2.9e-34 149.8 117 61.5
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 1.5e-33 147.5 117 58.1
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 2.0e-30 137.1 135 58.5
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 4.4e-30 136.0 91 68.1
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 7.8e-27 125.2 154 50.0
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-21 107.1 124 46.8
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 5.1e-18 95.9 71 63.4
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 1.1e-17 94.7 88 55.7
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 6.2e-16 89.0 90 52.2
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 2.9e-13 80.1 119 37.8
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 2.7e-11 73.6 42 66.7
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 3.5e-11 73.2 77 49.4
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 1.2e-08 64.7 91 36.3
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.2e-08 64.7 82 47.6
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 3.1e-07 60.1 178 27.5
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 8.9e-07 58.5 120 31.7
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 1.2e-06 58.2 120 29.2
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 2.0e-06 57.4 204 25.5
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 2.6e-06 57.0 191 25.7
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 4.4e-06 56.2 208 24.0
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 4.4e-06 56.2 185 25.4


User provided reference genes

Program Settings