Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 1.2e-225 786.2 410 100.0
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 8.3e-89 331.6 458 46.1
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 2.3e-86 323.6 509 43.4
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 1.9e-77 293.9 485 43.1
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 9.9e-66 255.0 505 38.8
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 3.1e-59 233.4 436 38.8
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 9.3e-56 221.9 515 34.0
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 4.6e-55 219.5 518 34.6
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 6.0e-55 219.2 519 34.1
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 2.5e-53 213.8 506 35.4
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 3.6e-52 209.9 438 38.6
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 4.8e-52 209.5 427 36.8
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 8.1e-52 208.8 430 38.6
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.1e-51 208.4 450 36.9
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.8e-51 207.6 454 36.1
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 4.0e-51 206.5 504 34.3
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.6e-50 203.8 453 36.2
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 9.9e-50 201.8 462 34.8
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.8e-49 199.9 468 37.0
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 6.4e-49 199.1 454 35.5
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 6.4e-49 199.1 471 36.7
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 8.4e-49 198.7 521 32.2
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 3.2e-48 196.8 477 34.2
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 9.3e-48 195.3 474 35.0
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 2.7e-47 193.7 469 35.0
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 7.9e-47 192.2 429 37.5
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.8e-46 191.0 514 33.7
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.8e-46 191.0 464 35.3
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.3e-46 190.7 176 59.1
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.0e-46 190.3 473 33.0
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 5.1e-46 189.5 323 40.9
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 6.7e-46 189.1 556 32.7
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 6.7e-46 189.1 465 33.3
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 6.7e-46 189.1 453 34.7
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 6.7e-46 189.1 507 32.1
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 8.7e-46 188.7 445 36.4
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 8.7e-46 188.7 492 33.5
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.5e-45 188.0 442 34.8
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.5e-45 188.0 429 35.0
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.5e-45 187.2 446 35.2
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.6e-44 184.5 442 35.7
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 4.8e-44 183.0 454 34.4
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 6.2e-44 182.6 507 32.7
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 8.1e-44 182.2 443 34.5
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 1.1e-43 181.8 445 35.3
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.1e-43 180.3 501 31.7
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 4.0e-43 179.9 462 35.1
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 5.3e-43 179.5 459 34.0
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 5.3e-43 179.5 446 33.0
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 6.9e-43 179.1 543 31.7
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.5e-42 177.9 490 34.3
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.4e-42 176.8 528 31.1
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.8e-42 176.0 512 32.0
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 7.6e-42 175.6 510 31.4
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 7.6e-42 175.6 510 31.6
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.7e-41 174.5 512 31.8
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 2.2e-41 174.1 590 30.0
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 3.8e-41 173.3 461 33.6
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 3.8e-41 173.3 448 34.8
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 6.5e-41 172.6 510 32.2
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 4.6e-39 166.4 302 41.4
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 1.8e-38 164.5 292 41.1
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.5e-37 161.4 501 31.1
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.5e-37 161.4 395 33.4
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.9e-37 161.0 514 31.7
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 1.9e-37 161.0 375 36.8
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 2.5e-37 160.6 114 71.9
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 3.3e-37 160.2 415 32.0
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 1.6e-36 157.9 116 72.4
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.1e-36 157.5 316 39.9
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 2.8e-36 157.1 160 55.0
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 3.7e-36 156.8 498 29.7
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 4.8e-36 156.4 470 30.6
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 8.2e-36 155.6 519 30.4
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 1.8e-35 154.5 173 52.0
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 3.1e-35 153.7 489 30.9
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 5.3e-35 152.9 503 29.8
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.6e-34 150.6 114 65.8
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 3.4e-34 150.2 110 68.2
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 4.5e-34 149.8 203 45.8
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.7e-33 147.9 507 29.4
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.9e-33 147.1 102 70.6
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 2.9e-33 147.1 413 30.8
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 3.8e-33 146.7 516 30.6
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 8.4e-33 145.6 509 31.2
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.5e-32 144.1 438 32.2
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 7.2e-32 142.5 137 56.2
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 2.7e-31 140.6 516 30.0
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 3.5e-31 140.2 502 29.9
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 7.9e-31 139.0 447 31.8
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.3e-30 138.3 460 30.4
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 2.3e-30 137.5 304 38.8
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 5.1e-30 136.3 474 29.7
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 5.1e-30 136.3 474 29.7
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 3.3e-29 133.7 545 28.6
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 4.3e-29 133.3 445 31.5
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 4.8e-28 129.8 519 30.4
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 8.2e-28 129.0 437 28.1
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 3.1e-27 127.1 158 48.7
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 9.0e-27 125.6 480 29.0
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 2.6e-26 124.0 493 29.2
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.7e-25 121.3 487 28.7
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 1.7e-25 121.3 409 30.6
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 5.0e-25 119.8 398 29.6
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 1.1e-24 118.6 103 60.2
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 2.5e-24 117.5 381 28.6
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.2e-24 117.1 462 26.2
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 4.2e-24 116.7 271 34.7
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 1.2e-23 115.2 381 25.7
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.1e-23 114.4 406 30.3
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.5e-21 107.5 117 50.4
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 3.7e-20 103.6 422 28.2
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 5.9e-18 96.3 145 42.8
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 2.2e-17 94.4 143 43.4
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 6.1e-15 86.3 243 32.1
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 7.9e-15 85.9 280 31.1
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 4.8e-12 76.6 224 29.5
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 8.2e-12 75.9 80 48.8
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 7.0e-11 72.8 83 45.8
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.6e-10 71.6 161 29.8
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 2.6e-10 70.9 97 38.1
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 4.5e-10 70.1 116 36.2
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 1.3e-09 68.6 73 45.2
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 3.8e-09 67.0 121 32.2
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 3.8e-09 67.0 210 27.6
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 6.5e-09 66.2 77 41.6
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 1.1e-08 65.5 79 36.7
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.5e-08 65.1 77 40.3
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.9e-08 64.7 153 31.4
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.5e-08 64.3 75 42.7
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 3.2e-08 63.9 117 33.3
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 3.2e-08 63.9 190 28.9
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.2e-08 63.5 75 42.7
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 5.5e-08 63.2 89 38.2
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 5.5e-08 63.2 58 46.6
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 5.5e-08 63.2 82 40.2
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 7.2e-08 62.8 50 54.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 7.2e-08 62.8 283 25.1
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 9.4e-08 62.4 112 33.0
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 9.4e-08 62.4 55 49.1
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 9.4e-08 62.4 119 30.3
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.2e-07 62.0 75 41.3
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.2e-07 62.0 104 28.8
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 1.6e-07 61.6 77 39.0
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 2.1e-07 61.2 317 24.0
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 2.7e-07 60.8 79 39.2
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 2.7e-07 60.8 54 50.0
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 2.7e-07 60.8 251 26.3
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.6e-07 60.5 116 28.4
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.7e-07 60.1 274 23.4
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 4.7e-07 60.1 84 36.9
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 6.1e-07 59.7 120 28.3
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 8.0e-07 59.3 194 27.3
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 8.0e-07 59.3 56 46.4
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.0e-06 58.9 54 50.0
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.0e-06 58.9 54 50.0
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 1.4e-06 58.5 236 27.1
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 2.3e-06 57.8 101 29.7
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 2.3e-06 57.8 91 35.2
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 3.0e-06 57.4 118 30.5
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 4.0e-06 57.0 161 28.6
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 5.2e-06 56.6 270 25.6
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 6.7e-06 56.2 127 29.9
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 6.7e-06 56.2 272 26.8


User provided reference genes

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