Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.2e-269 932.6 474 100.0
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 2.0e-227 792.3 474 84.4
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.4e-209 733.0 473 79.7
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 3.2e-209 731.9 472 78.6
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.9e-206 722.6 474 76.8
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 7.6e-203 710.7 474 76.2
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 9.3e-201 703.7 474 75.9
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.0e-199 700.3 474 75.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 8.7e-199 697.2 479 75.8
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 4.3e-198 694.9 475 73.9
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 4.8e-197 691.4 477 73.2
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.8e-196 689.5 471 74.9
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 9.0e-196 687.2 475 73.3
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.2e-195 686.8 484 73.3
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 2.9e-194 682.2 479 73.1
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.9e-194 682.2 390 86.2
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 6.5e-194 681.0 471 73.2
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 9.3e-193 677.2 472 73.3
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 2.1e-192 676.0 431 79.6
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 6.0e-192 674.5 397 83.9
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.3e-191 673.3 474 74.1
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.3e-191 672.5 478 74.3
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 2.3e-191 672.5 475 73.7
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.3e-191 672.5 419 79.2
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 3.0e-191 672.2 428 79.0
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 5.1e-191 671.4 419 79.0
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.1e-190 670.2 419 78.8
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.3e-190 668.7 390 83.1
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 3.3e-190 668.7 472 72.5
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 5.7e-190 667.9 404 81.2
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 9.6e-190 667.2 414 79.2
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 1.3e-189 666.8 385 84.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.3e-189 666.8 404 80.7
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.6e-189 666.4 404 81.4
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.1e-189 666.0 473 72.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 4.8e-189 664.8 404 80.4
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 4.8e-189 664.8 426 78.6
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 6.3e-189 664.5 405 81.2
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 8.2e-189 664.1 439 76.5
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 1.1e-188 663.7 391 83.4
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.1e-188 663.7 468 73.7
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.4e-188 663.3 409 80.4
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 2.4e-188 662.5 408 80.4
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 2.4e-188 662.5 404 80.4
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 3.1e-188 662.1 396 82.8
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.1e-188 661.8 383 84.1
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 5.3e-188 661.4 406 81.3
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 5.3e-188 661.4 406 78.8
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 6.9e-188 661.0 428 77.6
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 9.0e-188 660.6 405 80.5
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-187 660.2 421 78.4
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.2e-187 660.2 388 84.3
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.2e-187 660.2 476 71.8
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.0e-187 659.4 421 78.4
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.0e-187 659.4 468 71.8
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.4e-187 658.7 438 76.9
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 7.6e-187 657.5 427 77.3
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.0e-186 657.1 406 81.0
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.3e-186 656.8 404 80.2
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.3e-186 656.8 406 78.1
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.7e-186 656.4 427 77.0
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 2.2e-186 656.0 431 76.6
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.2e-186 656.0 464 72.0
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.8e-186 655.2 421 77.9
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 6.5e-186 654.4 392 81.4
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 8.5e-186 654.1 467 71.3
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.1e-185 653.7 535 65.4
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.5e-185 652.5 394 79.7
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 3.2e-185 652.1 431 76.1
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 5.5e-185 651.4 420 77.1
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 5.5e-185 651.4 394 79.9
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.2e-184 650.2 428 75.9
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.6e-184 649.8 405 79.3
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 2.1e-184 649.4 386 81.6
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.7e-184 649.0 383 81.7
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 3.6e-184 648.7 382 83.0
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 6.1e-184 647.9 393 79.6
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 7.9e-184 647.5 428 75.0
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.0e-183 647.1 434 74.7
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.0e-183 647.1 395 80.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.8e-183 646.4 479 70.1
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.8e-183 646.4 396 80.8
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.3e-183 646.0 472 70.3
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 3.0e-183 645.6 390 81.0
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 3.0e-183 645.6 474 69.8
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 6.7e-183 644.4 386 81.1
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 6.7e-183 644.4 387 80.9
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 8.7e-183 644.0 381 82.4
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.7e-182 641.3 393 78.6
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 5.7e-182 641.3 394 79.4
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.7e-181 638.6 386 80.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 3.7e-181 638.6 386 80.1
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 3.7e-181 638.6 388 79.4
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.8e-181 638.3 410 75.4
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 6.3e-181 637.9 393 77.9
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.3e-181 637.9 410 75.1
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.2e-179 633.6 394 78.4
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.3e-178 630.2 394 78.9
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 5.0e-178 628.2 394 77.7
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 1.8e-175 619.8 372 79.8
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 3.0e-175 619.0 475 68.0
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.7e-173 612.1 387 77.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 3.7e-173 612.1 390 76.2
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.5e-171 606.7 366 80.6
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.2e-168 597.0 408 71.3
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.5e-163 578.9 467 66.4
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 8.2e-157 557.8 375 73.6
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.0e-155 553.1 356 73.9
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 8.8e-151 537.7 385 69.1
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.8e-148 530.0 377 68.7
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.1e-148 528.9 476 60.5
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.3e-146 523.9 404 67.6
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 8.8e-143 511.1 345 74.8
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 8.8e-143 511.1 473 60.3
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 2.2e-141 506.5 365 67.9
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 5.0e-138 495.4 393 65.1
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 4.7e-136 488.8 359 67.7
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.8e-135 486.9 371 63.6
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 6.8e-135 485.0 345 66.1
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 2.9e-133 479.6 363 65.0
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-131 474.2 275 83.6
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.5e-129 467.2 276 81.5
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.5e-121 440.7 289 72.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.2e-117 426.8 258 79.8
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 9.5e-113 411.4 252 81.0
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.6e-110 401.7 309 66.3
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 9.9e-110 401.4 284 70.4
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.6e-104 384.0 346 61.8
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.8e-103 380.6 343 61.5
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 2.1e-99 367.1 211 85.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 3.5e-99 366.3 251 74.5
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 6.9e-95 352.1 357 52.1
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.4e-92 343.6 218 79.4
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 4.2e-92 342.8 330 51.5
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 2.1e-88 330.5 201 78.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.2e-86 324.7 226 72.6
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 2.1e-75 287.3 211 67.3
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 7.4e-73 278.9 176 78.4
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 8.2e-64 248.8 124 92.7
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 3.1e-63 246.9 192 64.1
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.5e-62 244.6 387 39.5
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 2.5e-60 237.3 176 66.5
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 3.2e-60 236.9 136 86.0
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.3e-56 224.9 291 44.3
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.7e-56 224.6 168 67.9
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 5.3e-47 193.0 134 71.6
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 8.2e-40 169.1 115 76.5
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 7.0e-39 166.0 112 77.7
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 4.2e-36 156.8 85 84.7
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 6.3e-32 142.9 123 62.6
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 9.1e-31 139.0 77 90.9
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 8.3e-24 115.9 117 58.1
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 7.8e-22 109.4 90 62.2
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 6.6e-21 106.3 76 71.1
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 4.4e-17 93.6 60 85.0
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 1.7e-16 91.7 68 67.6
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.9e-15 88.2 58 63.8
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 5.4e-15 86.7 60 78.3
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 9.2e-15 85.9 50 80.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.1e-10 72.4 44 72.7
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 1.9e-07 61.6 220 25.9


User provided reference genes

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