Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21317 Striga asiatica HOM05D000445 ORTHO05D000314 4.0e-59 231.5 139 100.0
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 1.2e-15 87.0 42 95.2
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 2.4e-11 72.8 42 85.7
CAN.G1063.2 Capsicum annuum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
CAN.G1648.15 Capsicum annuum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
CAN.G1738.15 Capsicum annuum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
CAN.G210.9 Capsicum annuum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Peaxi162Scf00147g00312 Petunia axillaris HOM05D000445 ORTHO05D010350 4.0e-11 72.0 42 85.7
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Solyc03g078010.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 4.0e-11 72.0 42 85.7
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 5.3e-11 71.6 43 83.7
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 5.3e-11 71.6 43 83.7
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 5.3e-11 71.6 43 83.7
CAN.G8.28 Capsicum annuum HOM05D000445 ORTHO05D000314 6.9e-11 71.2 42 85.7
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-10 70.5 42 83.3
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.2e-10 70.5 42 83.3
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.2e-10 70.5 42 83.3
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 1.2e-10 70.5 42 83.3
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 2.6e-10 69.3 42 81.0
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 2.6e-10 69.3 42 81.0
CAN.G1298.13 Capsicum annuum HOM05D000445 ORTHO05D000314 3.4e-10 68.9 42 83.3
Nitab4.5_0003101g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.4e-10 68.9 42 83.3
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 4.4e-10 68.6 50 72.0
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 4.4e-10 68.6 42 81.0
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 4.4e-10 68.6 42 81.0
FvH4_c3g00160 Fragaria vesca HOM05D000445 ORTHO05D000314 7.6e-10 67.8 42 81.0
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 7.6e-10 67.8 42 81.0
Nitab4.5_0007104g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.6e-10 67.8 42 83.3
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 7.6e-10 67.8 42 81.0
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 7.6e-10 67.8 42 81.0
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 9.9e-10 67.4 42 81.0
Lj2C1239G59 Lonicera japonica HOM05D000445 ORTHO05D000314 9.9e-10 67.4 42 81.0
Lju5009C0G1 Lonicera japonica HOM05D000445 ORTHO05D000314 9.9e-10 67.4 42 81.0
Nitab4.5_0001761g0320 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.2e-09 66.2 42 81.0
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 2.2e-09 66.2 42 78.6
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 2.2e-09 66.2 42 78.6
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 2.2e-09 66.2 42 78.6
Gohir.A03G089101 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.9e-09 65.9 42 78.6
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.9e-09 65.9 42 78.6
Gorai.009G118200 Gossypium raimondii HOM05D000445 ORTHO05D000314 2.9e-09 65.9 42 78.6
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 3.8e-09 65.5 42 78.6
Nitab4.5_0002616g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.8e-09 65.5 42 78.6
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.8e-09 65.5 43 79.1
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 4.9e-09 65.1 43 76.7
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 4.9e-09 65.1 43 76.7
BraSC143t45672Z Brassica rapa HOM05D000445 ORTHO05D000314 4.9e-09 65.1 43 76.7
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 4.9e-09 65.1 43 79.1
AL1G45010 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 6.4e-09 64.7 43 76.7
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 6.4e-09 64.7 43 76.7
Lj2C1238G34 Lonicera japonica HOM05D000445 ORTHO05D000314 8.4e-09 64.3 42 78.6
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 1.4e-08 63.5 42 76.2
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 1.4e-08 63.5 42 76.2
Nitab4.5_0014666g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-08 63.5 42 78.6
RcHm_v2.0_Chr2g0118451 Rosa chinensis HOM05D000445 ORTHO05D000314 1.4e-08 63.5 42 78.6
BcaB02g11358 Brassica carinata HOM05D000445 ORTHO05D000314 1.9e-08 63.2 43 74.4
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 1.9e-08 63.2 43 74.4
BolSC29t60535H Brassica oleracea HOM05D000445 ORTHO05D000314 1.9e-08 63.2 43 74.4
BolSC29t60563H Brassica oleracea HOM05D000445 ORTHO05D000314 1.9e-08 63.2 43 74.4
BolSC29t60617H Brassica oleracea HOM05D000445 ORTHO05D000314 1.9e-08 63.2 43 74.4
BolSC47t61073H Brassica oleracea HOM05D000445 ORTHO05D000314 1.9e-08 63.2 43 74.4
Gorai.004G232100 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.9e-08 63.2 42 73.8
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 4.2e-08 62.0 38 84.2
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 4.2e-08 62.0 38 84.2
Lsat_1_v5_gn_9_85820 Lactuca sativa HOM05D000445 ORTHO05D000314 4.2e-08 62.0 38 84.2
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 5.4e-08 61.6 43 74.4
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 5.4e-08 61.6 42 76.2
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr00c0349g0573981 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 7.1e-08 61.2 39 82.1
Solyc01g017410.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.1e-08 61.2 43 72.1
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 1.2e-07 60.5 42 71.4
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 1.2e-07 60.5 42 71.4
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 1.2e-07 60.5 42 71.4
Nn1g10066 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.2e-07 60.5 40 80.0
Nn1g10127 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.2e-07 60.5 40 80.0
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 1.6e-07 60.1 42 73.8
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 2.1e-07 59.7 43 72.1
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 2.1e-07 59.7 43 72.1
arahy.Tifrunner.gnm1.ann1.FTZ997 Arachis hypogaea HOM05D000445 ORTHO05D000314 2.1e-07 59.7 42 71.4
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 2.1e-07 59.7 43 72.1
HanXRQChr11g0336111 Helianthus annuus HOM05D000445 ORTHO05D000314 2.1e-07 59.7 39 79.5
HanXRQChr11g0336131 Helianthus annuus HOM05D000445 ORTHO05D000314 2.1e-07 59.7 39 79.5
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 2.7e-07 59.3 42 71.4
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 2.7e-07 59.3 42 71.4
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 2.7e-07 59.3 42 71.4
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.3e-06 57.0 47 66.0
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.3e-06 57.0 47 66.0
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.3e-06 57.0 47 66.0
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.3e-06 57.0 47 66.0
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.3e-06 57.0 47 66.0
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 1.3e-06 57.0 42 69.0
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.3e-06 57.0 42 66.7
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.3e-06 57.0 42 66.7
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 3.0e-06 55.8 43 69.8


User provided reference genes

Program Settings