Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold61G21230 Striga asiatica HOM05D000932 ORTHO05D000729 7.4e-77 290.4 142 100.0
CSS0010735 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 4.5e-26 121.7 188 42.6
Dinv32825 Davidia involucrata HOM05D000932 ORTHO05D000729 3.4e-21 105.5 138 49.3
Oeu040996.1 Olea europaea HOM05D000932 ORTHO05D000729 5.7e-21 104.8 96 59.4
Cc01_g12030 Coffea canephora HOM05D000932 ORTHO05D000729 3.7e-20 102.1 96 56.2
Oeu062310.1 Olea europaea HOM05D000932 ORTHO05D000729 6.3e-20 101.3 62 72.6
MSTRG.21165 Avicennia marina HOM05D000932 ORTHO05D000729 8.3e-20 100.9 252 33.7
SalBow3G0934 Salvia bowleyana HOM05D000932 ORTHO05D000729 1.4e-19 100.1 228 37.7
SalBow3G1225 Salvia bowleyana HOM05D000932 ORTHO05D000729 2.4e-19 99.4 230 37.4
Migut.D02156 Erythranthe guttata HOM05D000932 ORTHO05D000729 1.6e-18 96.7 64 75.0
Actinidia00809 Actinidia chinensis HOM05D000932 ORTHO05D000729 3.8e-17 92.0 97 54.6
GSVIVG01025065001 Vitis vinifera HOM05D000932 ORTHO05D000729 3.8e-17 92.0 96 54.2
Actinidia03768 Actinidia chinensis HOM05D000932 ORTHO05D000729 5.0e-17 91.7 97 56.7
Hund05021 Selenicereus undatus HOM05D000932 ORTHO05D000729 6.5e-17 91.3 65 69.2
TAR623G0516 Trochodendron aralioides HOM05D000932 ORTHO05D000729 1.1e-16 90.5 62 67.7
Nitab4.5_0009199g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 4.2e-16 88.6 98 55.1
Potri.001G233600 Populus trichocarpa HOM05D000932 ORTHO05D000729 9.5e-16 87.4 96 52.1
Manes.11G137200 Manihot esculenta HOM05D000932 ORTHO05D000729 1.2e-15 87.0 97 54.6
Duzib168G1389 Durio zibethinus HOM05D000932 ORTHO05D000729 2.1e-15 86.3 94 52.1
Thecc.09G331400 Theobroma cacao HOM05D000932 ORTHO05D000729 2.8e-15 85.9 94 51.1
AUR62001856 Chenopodium quinoa HOM05D000932 ORTHO05D000729 8.0e-15 84.3 65 67.7
AUR62009650 Chenopodium quinoa HOM05D000932 ORTHO05D000729 8.0e-15 84.3 65 67.7
Nitab4.5_0009445g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 8.0e-15 84.3 134 46.3
TWI75G0146 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 8.0e-15 84.3 66 65.2
MBI14_g20929_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 1.4e-14 83.6 63 63.5
Aqoxy4G03107 Aquilegia oxysepala HOM05D000932 ORTHO05D000729 3.0e-14 82.4 62 61.3
EL10Ac7g15936 Beta vulgaris HOM05D000932 ORTHO05D000729 3.0e-14 82.4 64 62.5
MD11G1118000 Malus domestica HOM05D000932 ORTHO05D000729 4.0e-14 82.0 91 51.6
Nitab4.5_0008854g0010 Nicotiana tabacum HOM05D000932 ORTHO05D000729 4.0e-14 82.0 72 63.9
VMungo1080G1675 Vigna mungo HOM05D000932 ORTHO05D000729 5.2e-14 81.6 57 64.9
MD03G1105500 Malus domestica HOM05D000932 ORTHO05D000729 6.8e-14 81.3 91 51.6
Oeu040265.1 Olea europaea HOM05D000932 ORTHO05D000729 6.8e-14 81.3 62 62.9
CiPaw.13G102500 Carya illinoinensis HOM05D000932 ORTHO05D000729 1.2e-13 80.5 59 62.7
Rhsim01G0223700 Rhododendron simsii HOM05D000932 ORTHO05D000729 1.2e-13 80.5 62 64.5
Lj2A1045T49 Lonicera japonica HOM05D000932 ORTHO05D000729 2.0e-13 79.7 111 49.5
vmacro14497 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 2.0e-13 79.7 60 61.7
Peaxi162Scf00836g00322 Petunia axillaris HOM05D000932 ORTHO05D000729 3.4e-13 79.0 109 49.5
Hund18947 Selenicereus undatus HOM05D000932 ORTHO05D000729 4.4e-13 78.6 66 65.2
FAN11G1095 Fragaria x ananassa HOM05D000932 ORTHO05D000729 5.7e-13 78.2 93 51.6
Phvul.L002465 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 5.7e-13 78.2 57 61.4
Ah.08g215020 Amaranthus hybridus HOM05D000932 ORTHO05D000729 7.5e-13 77.8 65 56.9
FAN16G0142 Fragaria x ananassa HOM05D000932 ORTHO05D000729 2.2e-12 76.3 93 50.5
FAN21G3891 Fragaria x ananassa HOM05D000932 ORTHO05D000729 2.2e-12 76.3 93 50.5
FAN25G0417 Fragaria x ananassa HOM05D000932 ORTHO05D000729 2.2e-12 76.3 93 50.5
DCAR_005294 Daucus carota HOM05D000932 ORTHO05D000729 2.8e-12 75.9 68 58.8
RcHm_v2.0_Chr5g0062181 Rosa chinensis HOM05D000932 ORTHO05D000729 2.8e-12 75.9 93 50.5
Solyc11g072850.2 Solanum lycopersicum HOM05D000932 ORTHO05D000729 3.7e-12 75.5 57 66.7
Sopen11g030520 Solanum pennellii HOM05D000932 ORTHO05D000729 3.7e-12 75.5 57 66.7
PGSC0003DMG400015524 Solanum tuberosum HOM05D000932 ORTHO05D000729 3.7e-12 75.5 57 66.7
Glyma.13G331000 Glycine max HOM05D000932 ORTHO05D000729 4.9e-12 75.1 92 51.1
Glyma.15G219800 Glycine max HOM05D000932 ORTHO05D000729 8.3e-12 74.3 92 48.9
Nn2g10563 Nelumbo nucifera HOM05D000932 ORTHO05D000729 8.3e-12 74.3 64 60.9
Gohir.A05G099300 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.4e-11 72.8 65 60.0
Gohir.D05G099200 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.4e-11 72.8 65 60.0
Gorai.009G103100 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.4e-11 72.8 65 60.0
Lsat_1_v5_gn_9_21300 Lactuca sativa HOM05D000932 ORTHO05D000729 4.1e-11 72.0 66 59.1
QL01p034599 Quercus lobata HOM05D000932 ORTHO05D000729 4.1e-11 72.0 98 49.0
TPR.G11573 Trifolium pratense HOM05D000932 ORTHO05D000729 4.1e-11 72.0 58 56.9
Ciclev10029153m.g Citrus clementina HOM05D000932 ORTHO05D000729 5.4e-11 71.6 91 49.5
TWI31G1196 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 5.4e-11 71.6 97 48.5
Duzib170G0631 Durio zibethinus HOM05D000932 ORTHO05D000729 7.0e-11 71.2 90 50.0
DCAR_006019 Daucus carota HOM05D000932 ORTHO05D000729 9.2e-11 70.9 65 55.4
Glyma.11G146690 Glycine max HOM05D000932 ORTHO05D000729 9.2e-11 70.9 86 48.8
CAN.G971.7 Capsicum annuum HOM05D000932 ORTHO05D000729 1.6e-10 70.1 58 63.8
Gorai.001G106600 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.0e-10 69.7 95 46.3
Lj3g0019030 Lotus japonicus HOM05D000932 ORTHO05D000729 2.7e-10 69.3 58 53.4
PGR119G1900 Punica granatum HOM05D000932 ORTHO05D000729 2.7e-10 69.3 95 47.4
arahy.Tifrunner.gnm1.ann1.3QBB6E Arachis hypogaea HOM05D000932 ORTHO05D000729 5.9e-10 68.2 99 45.5
Sc12g0001850 Simmondsia chinensis HOM05D000932 ORTHO05D000729 5.9e-10 68.2 72 50.0
arahy.Tifrunner.gnm1.ann1.IR754M Arachis hypogaea HOM05D000932 ORTHO05D000729 7.8e-10 67.8 92 46.7
Phvul.011G069800 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.0e-09 67.4 86 47.7
Gohir.A03G036900 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.3e-09 66.2 92 45.7
VMungo1127G0752 Vigna mungo HOM05D000932 ORTHO05D000729 2.3e-09 66.2 86 46.5
Medtr4g061823 Medicago truncatula HOM05D000932 ORTHO05D000729 2.9e-09 65.9 65 50.8
Medtr4g061910 Medicago truncatula HOM05D000932 ORTHO05D000729 2.9e-09 65.9 65 50.8
CANSAT54G2797 Cannabis sativa HOM05D000932 ORTHO05D000729 3.8e-09 65.5 92 46.7
ClCG02G020570 Citrullus lanatus HOM05D000932 ORTHO05D000729 3.8e-09 65.5 134 40.3
ClCG03G001780 Citrullus lanatus HOM05D000932 ORTHO05D000729 5.0e-09 65.1 116 38.8
Psat5g282000 Pisum sativum HOM05D000932 ORTHO05D000729 5.0e-09 65.1 63 54.0
arahy.Tifrunner.gnm1.ann1.KU7VJQ Arachis hypogaea HOM05D000932 ORTHO05D000729 6.6e-09 64.7 96 45.8
Gohir.D03G131400 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.1e-08 63.9 92 44.6
SHI05990 Sapria himalayana HOM05D000932 ORTHO05D000729 1.1e-08 63.9 56 57.1
Gorai.003G138200 Gossypium raimondii HOM05D000932 ORTHO05D000729 1.9e-08 63.2 61 54.1
Haze_23997 Corylus avellana HOM05D000932 ORTHO05D000729 2.5e-08 62.8 101 44.6
MELO3C025709.2 Cucumis melo HOM05D000932 ORTHO05D000729 2.5e-08 62.8 103 44.7
Medtr2g096080 Medicago truncatula HOM05D000932 ORTHO05D000729 2.5e-08 62.8 62 50.0
HanXRQChr08g0230561 Helianthus annuus HOM05D000932 ORTHO05D000729 3.3e-08 62.4 66 54.5
AL8G36560 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 4.3e-08 62.0 92 46.7
Sed0007122 Sechium edule HOM05D000932 ORTHO05D000729 4.3e-08 62.0 101 45.5
Aa31LG1G12120 Aethionema arabicum HOM05D000932 ORTHO05D000729 5.6e-08 61.6 58 60.3
Ah.15g096310 Amaranthus hybridus HOM05D000932 ORTHO05D000729 5.6e-08 61.6 51 60.8
Carub.0008s2069 Capsella rubella HOM05D000932 ORTHO05D000729 5.6e-08 61.6 93 49.5
AT5G59990 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 9.5e-08 60.8 92 45.7
BcaB05g22601 Brassica carinata HOM05D000932 ORTHO05D000729 9.5e-08 60.8 58 56.9
C02p11960 Brassica napus HOM05D000932 ORTHO05D000729 1.2e-07 60.5 92 45.7
BolC2t07295H Brassica oleracea HOM05D000932 ORTHO05D000729 1.2e-07 60.5 92 45.7
BraA02t05749Z Brassica rapa HOM05D000932 ORTHO05D000729 1.2e-07 60.5 92 45.7
Lalb_Chr03g0026971 Lupinus albus HOM05D000932 ORTHO05D000729 1.2e-07 60.5 90 46.7
BcaB08g36204 Brassica carinata HOM05D000932 ORTHO05D000729 1.6e-07 60.1 58 55.2
Thhalv10014534m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 1.6e-07 60.1 93 49.5
SalBow3G2952 Salvia bowleyana HOM05D000932 ORTHO05D000729 2.8e-07 59.3 92 42.4
Sp6g21660 Schrenkiella parvula HOM05D000932 ORTHO05D000729 2.8e-07 59.3 59 62.7
TPR.G2974 Trifolium pratense HOM05D000932 ORTHO05D000729 3.6e-07 58.9 58 51.7
A10p17200 Brassica napus HOM05D000932 ORTHO05D000729 4.7e-07 58.5 58 56.9
BraA10t43801Z Brassica rapa HOM05D000932 ORTHO05D000729 4.7e-07 58.5 58 56.9
Sed0019895 Sechium edule HOM05D000932 ORTHO05D000729 4.7e-07 58.5 67 44.8
arahy.Tifrunner.gnm1.ann1.AE0X9Y Arachis hypogaea HOM05D000932 ORTHO05D000729 6.1e-07 58.2 57 56.1
BcaC04g19654 Brassica carinata HOM05D000932 ORTHO05D000729 8.0e-07 57.8 59 59.3
C09p52490 Brassica napus HOM05D000932 ORTHO05D000729 8.0e-07 57.8 59 59.3
BolC9t58116H Brassica oleracea HOM05D000932 ORTHO05D000729 8.0e-07 57.8 59 59.3
Lalb_Chr24g0394321 Lupinus albus HOM05D000932 ORTHO05D000729 1.0e-06 57.4 62 46.8
Ca_01362_v3 Cicer arietinum L. HOM05D000932 ORTHO05D000729 1.8e-06 56.6 56 51.8
THA.LOC104799467 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 1.8e-06 56.6 59 52.5
ECA240G4070 Erigeron canadensis HOM05D000932 ORTHO05D000729 3.0e-06 55.8 43 69.8
CsaV3_1G033810 Cucumis sativus L. HOM05D000932 ORTHO05D000729 4.0e-06 55.5 114 38.6
PSO063G6721 Papaver somniferum HOM05D000932 ORTHO05D000729 4.0e-06 55.5 65 53.8
Cfa011417 Carpinus fangiana HOM05D000932 ORTHO05D000729 5.2e-06 55.1 102 41.2
CsaV3_6G022010 Cucumis sativus L. HOM05D000932 ORTHO05D000729 5.2e-06 55.1 107 41.1
MBI04_g00371_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 5.2e-06 55.1 53 50.9
Sabra03G0092800 Salix brachista HOM05D000932 ORTHO05D000729 5.2e-06 55.1 60 51.7
Cfa012201 Carpinus fangiana HOM05D000932 ORTHO05D000729 6.8e-06 54.7 42 66.7
Haze_08815 Corylus avellana HOM05D000932 ORTHO05D000729 6.8e-06 54.7 43 65.1
Glyma.12G074400 Glycine max HOM05D000932 ORTHO05D000729 6.8e-06 54.7 55 52.7
Hund11451 Selenicereus undatus HOM05D000932 ORTHO05D000729 8.9e-06 54.3 44 63.6


User provided reference genes

Program Settings