Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.9e-102 375.2 181 100.0
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 2.0e-87 325.9 181 82.3
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 3.8e-86 321.6 176 85.2
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 6.5e-86 320.9 181 83.4
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 7.7e-79 297.4 180 76.7
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 1.3e-78 296.6 176 79.5
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.3e-78 296.6 167 80.8
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.3e-78 296.6 167 80.8
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.3e-78 296.6 167 82.6
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.7e-78 296.2 166 81.9
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.7e-78 296.2 167 81.4
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 2.9e-78 295.4 176 78.4
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 8.5e-78 293.9 167 79.6
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 1.1e-77 293.5 176 79.5
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.4e-77 293.1 168 81.0
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.9e-77 292.7 169 78.7
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 3.2e-77 292.0 166 80.1
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 4.2e-77 291.6 168 81.5
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 4.2e-77 291.6 177 76.3
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 5.5e-77 291.2 171 77.8
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 5.5e-77 291.2 167 78.4
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 9.4e-77 290.4 167 79.6
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 9.4e-77 290.4 169 78.1
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.2e-76 290.0 170 76.5
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.2e-76 290.0 176 76.1
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 1.2e-76 290.0 176 77.8
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 1.2e-76 290.0 167 79.6
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.6e-76 289.7 176 76.7
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 2.1e-76 289.3 177 75.7
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 2.7e-76 288.9 168 75.0
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 3.6e-76 288.5 172 77.9
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 3.6e-76 288.5 166 78.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 4.7e-76 288.1 167 76.0
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 4.7e-76 288.1 168 79.2
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 6.1e-76 287.7 181 74.6
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 7.9e-76 287.3 181 74.0
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 7.9e-76 287.3 167 78.4
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.4e-75 286.6 172 75.0
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 1.8e-75 286.2 166 81.9
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 1.8e-75 286.2 177 75.1
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.3e-75 285.8 177 74.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.0e-75 285.4 168 74.4
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 3.0e-75 285.4 166 76.5
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.0e-75 285.4 166 76.5
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 3.9e-75 285.0 168 76.2
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 3.9e-75 285.0 177 74.6
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 5.1e-75 284.6 168 75.6
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 6.7e-75 284.3 167 77.8
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 6.7e-75 284.3 174 74.1
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 8.8e-75 283.9 166 76.5
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 8.8e-75 283.9 166 76.5
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 1.1e-74 283.5 167 76.6
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 2.0e-74 282.7 169 76.9
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.0e-74 282.7 177 73.4
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.6e-74 282.3 177 74.0
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 2.6e-74 282.3 167 74.9
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 2.6e-74 282.3 166 76.5
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 2.6e-74 282.3 166 76.5
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 2.6e-74 282.3 167 77.2
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 2.6e-74 282.3 167 77.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.3e-74 282.0 171 75.4
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 5.7e-74 281.2 172 75.0
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 5.7e-74 281.2 167 76.6
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 7.4e-74 280.8 172 75.0
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 7.4e-74 280.8 172 75.0
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 7.4e-74 280.8 167 73.7
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 9.7e-74 280.4 168 75.6
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.3e-73 280.0 171 73.1
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.3e-73 280.0 168 75.0
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.3e-73 280.0 166 75.3
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.3e-73 280.0 171 74.3
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.3e-73 280.0 166 77.1
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.3e-73 280.0 213 65.3
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.7e-73 279.6 168 75.6
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.2e-73 279.3 168 73.8
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.8e-73 278.9 169 75.1
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 2.8e-73 278.9 168 75.6
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 2.8e-73 278.9 171 72.5
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 2.8e-73 278.9 166 77.1
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 2.8e-73 278.9 166 77.7
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 4.8e-73 278.1 171 73.7
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 6.3e-73 277.7 187 73.3
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 6.3e-73 277.7 168 74.4
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 6.3e-73 277.7 168 75.6
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 8.2e-73 277.3 167 76.0
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 8.2e-73 277.3 168 74.4
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.4e-72 276.6 168 75.0
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 1.4e-72 276.6 166 74.7
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.8e-72 276.2 169 75.1
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.8e-72 276.2 169 74.0
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.8e-72 276.2 167 74.3
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.8e-72 276.2 167 75.4
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.1e-72 275.4 162 75.9
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 4.1e-72 275.0 176 72.7
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 5.3e-72 274.6 176 69.9
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 9.1e-72 273.9 167 73.7
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.5e-71 271.6 177 72.9
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 4.5e-71 271.6 168 73.2
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.0e-70 270.4 171 70.2
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.3e-70 270.0 173 73.4
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.2e-70 269.2 173 71.1
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 2.2e-70 269.2 154 81.2
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 2.9e-70 268.9 176 71.0
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 3.8e-70 268.5 166 70.5
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 3.8e-70 268.5 166 73.5
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 3.8e-70 268.5 166 75.9
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 6.5e-70 267.7 168 72.6
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 2.5e-69 265.8 176 69.9
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.5e-69 265.8 173 71.1
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 4.2e-69 265.0 170 71.2
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.2e-69 264.2 241 56.8
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 4.7e-68 261.5 173 71.1
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 6.1e-68 261.2 168 71.4
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.4e-67 260.0 167 69.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 5.2e-67 258.1 167 73.1
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 8.8e-67 257.3 167 71.3
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.5e-66 256.5 167 73.1
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.5e-66 256.5 167 73.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 5.7e-66 254.6 167 72.5
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 8.2e-65 250.8 176 65.3
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 8.2e-65 250.8 171 66.1
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.1e-64 248.8 172 69.2
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 4.1e-64 248.4 160 75.0
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 7.0e-64 247.7 177 64.4
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 3.5e-63 245.4 170 64.1
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.9e-62 242.3 165 64.8
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 5.0e-62 241.5 183 64.5
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 8.0e-60 234.2 177 62.7
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 8.8e-59 230.7 168 61.9
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 8.8e-59 230.7 168 66.1
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 5.7e-58 228.0 163 63.8
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 9.7e-58 227.3 160 63.1
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 3.7e-57 225.3 162 61.7
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 3.1e-56 222.2 168 60.1
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 6.1e-52 208.0 167 55.7
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.3e-46 189.5 110 74.5
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 6.6e-46 188.0 176 55.1
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 8.6e-46 187.6 110 76.4
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 3.3e-45 185.7 172 50.6
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 2.3e-43 179.5 123 66.7
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.3e-43 179.5 106 75.5
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.0e-42 176.4 112 71.4
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 3.7e-41 172.2 99 77.8
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 6.3e-41 171.4 100 74.0
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.6e-39 166.8 100 73.0
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.0e-39 166.4 118 67.8
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-37 160.6 106 67.9
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-37 160.6 106 67.9
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.6e-36 156.8 85 85.9
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 2.1e-36 156.4 176 51.7
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 3.6e-36 155.6 104 66.3
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 1.2e-31 140.6 170 49.4
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 4.4e-26 122.1 162 38.3
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 3.7e-25 119.0 143 51.0
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 4.9e-25 118.6 78 69.2
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 1.3e-22 110.5 123 48.0
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 5.2e-19 98.6 179 31.3
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.4e-18 95.5 63 68.3
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.7e-17 93.6 66 69.7
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.3e-13 79.3 60 58.3
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 7.3e-13 78.2 79 45.6
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 4.7e-12 75.5 70 54.3
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 3.1e-11 72.8 35 88.6
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 8.9e-11 71.2 61 59.0
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.1e-07 60.1 48 62.5


User provided reference genes

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