Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-74 282.3 150 100.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.0e-36 157.1 187 56.7
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 4.0e-25 118.6 180 48.9
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 7.1e-22 107.8 187 42.2
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.7e-21 105.9 178 44.9
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 7.9e-21 104.4 174 47.1
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.3e-18 97.1 164 45.7
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.6e-18 96.7 167 43.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 2.2e-18 96.3 179 42.5
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 8.2e-18 94.4 87 58.6
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.4e-17 93.6 175 42.3
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.0e-16 89.7 177 37.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 7.6e-16 87.8 159 40.3
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 7.6e-16 87.8 166 42.8
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.0e-15 87.4 165 41.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.8e-15 85.5 175 40.6
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.8e-15 85.5 175 40.6
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 5.0e-15 85.1 178 41.6
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.1e-14 84.0 175 37.7
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.2e-14 82.4 177 38.4
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 4.2e-14 82.0 169 40.8
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 7.2e-14 81.3 135 40.7
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.6e-13 80.1 171 36.8
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.7e-13 79.3 172 38.4
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 7.9e-13 77.8 167 38.9
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.0e-12 77.4 156 37.2
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.0e-12 77.4 178 36.5
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.4e-12 77.0 168 39.3
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.9e-12 75.5 168 38.1
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 6.7e-12 74.7 172 34.9
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 6.7e-12 74.7 164 34.8
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 8.8e-12 74.3 162 35.8
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.1e-11 73.9 164 38.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.1e-11 73.9 170 37.1
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-11 73.6 173 39.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.5e-11 73.6 165 37.6
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.5e-11 73.6 171 38.0
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.9e-11 73.2 174 37.9
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.5e-11 72.8 174 36.8
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.5e-11 72.8 92 52.2
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.5e-11 72.8 172 37.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 3.3e-11 72.4 162 34.0
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.3e-11 72.4 174 37.4
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 3.3e-11 72.4 165 37.6
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 3.3e-11 72.4 167 38.9
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.3e-11 72.0 179 37.4
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.3e-11 72.0 83 55.4
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 4.3e-11 72.0 159 35.2
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.7e-11 71.6 83 49.4
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 5.7e-11 71.6 83 49.4
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 5.7e-11 71.6 83 49.4
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 7.4e-11 71.2 83 49.4
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.4e-11 71.2 173 33.5
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.4e-11 71.2 83 49.4
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.4e-11 71.2 167 38.3
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 7.4e-11 71.2 167 38.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 9.7e-11 70.9 157 35.7
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 9.7e-11 70.9 165 35.2
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 9.7e-11 70.9 83 50.6
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.7e-11 70.9 171 34.5
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.7e-10 70.1 160 35.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.7e-10 70.1 83 49.4
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.7e-10 70.1 152 38.2
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.2e-10 69.7 165 35.2
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.2e-10 69.7 167 38.3
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.2e-10 69.7 63 61.9
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.8e-10 69.3 159 34.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.8e-10 69.3 166 34.9
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.8e-10 69.3 175 36.0
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.8e-10 69.3 97 47.4
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.8e-10 68.6 83 51.8
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 4.8e-10 68.6 174 31.6
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 6.3e-10 68.2 171 33.3
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 6.3e-10 68.2 175 36.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 8.2e-10 67.8 84 51.2
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 8.2e-10 67.8 172 33.1
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 8.2e-10 67.8 90 47.8
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.1e-09 67.4 176 33.0
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.1e-09 67.4 175 33.7
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.1e-09 67.4 168 35.1
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.4e-09 67.0 165 33.9
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.4e-09 67.0 172 32.0
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.4e-09 67.0 87 48.3
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.8e-09 66.6 169 35.5
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.8e-09 66.6 83 50.6
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.8e-09 66.6 87 42.5
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.4e-09 66.2 166 33.7
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.4e-09 66.2 172 33.7
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.1e-09 65.9 164 31.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 4.1e-09 65.5 170 31.8
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 4.1e-09 65.5 170 31.8
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 5.3e-09 65.1 173 34.1
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.9e-09 64.7 140 37.1
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 6.9e-09 64.7 175 33.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.2e-08 63.9 83 45.8
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-08 63.5 83 47.0
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.5e-08 63.5 83 47.0
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.5e-08 63.5 54 59.3
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.5e-08 63.5 54 59.3
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.0e-08 63.2 83 48.2
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 2.0e-08 63.2 164 36.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.6e-08 62.8 84 41.7
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 4.5e-08 62.0 172 32.6
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.5e-08 62.0 184 37.0
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.9e-08 61.6 85 42.4
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.9e-08 61.6 88 42.0
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.0e-07 60.8 149 33.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-07 60.5 164 34.1
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.7e-07 60.1 178 32.0
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 2.2e-07 59.7 175 34.9
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.9e-07 59.3 84 42.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 5.0e-07 58.5 175 35.4
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.5e-07 58.2 88 39.8
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 8.5e-07 57.8 84 45.2
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.1e-06 57.4 83 44.6
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 3.2e-06 55.8 85 41.2
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.2e-06 54.7 163 31.9


User provided reference genes

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